Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CXCL1P09341 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CXCL1P09341 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CXCL1P09341 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CXCL1P09341 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.82■□□□□ 0.6
CXCL1P09341 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC18.82■□□□□ 0.6
CXCL1P09341 AC100797.4-201ENST00000631653 1827 ntBASIC18.82■□□□□ 0.6
CXCL1P09341 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CXCL1P09341 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CXCL1P09341 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CXCL1P09341 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CXCL1P09341 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CXCL1P09341 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CXCL1P09341 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CXCL1P09341 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CXCL1P09341 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CXCL1P09341 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC18.81■□□□□ 0.6
CXCL1P09341 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.81■□□□□ 0.6
CXCL1P09341 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CXCL1P09341 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CXCL1P09341 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CXCL1P09341 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CXCL1P09341 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CXCL1P09341 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CXCL1P09341 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CXCL1P09341 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CXCL1P09341 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CXCL1P09341 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CXCL1P09341 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CXCL1P09341 AP002414.2-202ENST00000590929 1450 ntBASIC18.79■□□□□ 0.6
CXCL1P09341 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC18.79■□□□□ 0.6
CXCL1P09341 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CXCL1P09341 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CXCL1P09341 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CXCL1P09341 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CXCL1P09341 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CXCL1P09341 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CXCL1P09341 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CXCL1P09341 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CXCL1P09341 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CXCL1P09341 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CXCL1P09341 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CXCL1P09341 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CXCL1P09341 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC18.78■□□□□ 0.6
CXCL1P09341 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CXCL1P09341 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC18.78■□□□□ 0.6
CXCL1P09341 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CXCL1P09341 AC127502.1-201ENST00000399971 1502 ntBASIC18.77■□□□□ 0.6
CXCL1P09341 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
CXCL1P09341 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CXCL1P09341 AC022211.4-201ENST00000625094 2161 ntBASIC18.76■□□□□ 0.59
CXCL1P09341 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.76■□□□□ 0.59
CXCL1P09341 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL1P09341 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL1P09341 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CXCL1P09341 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CXCL1P09341 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.75■□□□□ 0.59
CXCL1P09341 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.75■□□□□ 0.59
CXCL1P09341 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL1P09341 AL024507.2-201ENST00000606070 2574 ntBASIC18.75■□□□□ 0.59
CXCL1P09341 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL1P09341 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL1P09341 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CXCL1P09341 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL1P09341 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.74■□□□□ 0.59
CXCL1P09341 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL1P09341 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL1P09341 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CXCL1P09341 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.74■□□□□ 0.59
CXCL1P09341 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL1P09341 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.73■□□□□ 0.59
CXCL1P09341 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.73■□□□□ 0.59
CXCL1P09341 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC18.73■□□□□ 0.59
CXCL1P09341 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL1P09341 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL1P09341 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL1P09341 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL1P09341 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CXCL1P09341 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL1P09341 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL1P09341 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL1P09341 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CXCL1P09341 DENR-202ENST00000455982 1052 ntTSL 5 BASIC18.72■□□□□ 0.59
CXCL1P09341 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC18.72■□□□□ 0.59
CXCL1P09341 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CXCL1P09341 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL1P09341 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL1P09341 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL1P09341 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL1P09341 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL1P09341 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CXCL1P09341 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL1P09341 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL1P09341 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC18.7■□□□□ 0.58
CXCL1P09341 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL1P09341 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CXCL1P09341 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL1P09341 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL1P09341 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CXCL1P09341 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms