Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PDGFAP04085 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFAP04085 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
PDGFAP04085 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFAP04085 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFAP04085 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.71■■□□□ 1.23
PDGFAP04085 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFAP04085 AC131212.1-201ENST00000613771 668 ntBASIC22.71■■□□□ 1.23
PDGFAP04085 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
PDGFAP04085 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFAP04085 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFAP04085 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFAP04085 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC22.7■■□□□ 1.23
PDGFAP04085 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PDGFAP04085 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.7■■□□□ 1.22
PDGFAP04085 GUSBP5-201ENST00000418136 578 ntBASIC22.7■■□□□ 1.22
PDGFAP04085 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.7■■□□□ 1.22
PDGFAP04085 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.7■■□□□ 1.22
PDGFAP04085 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
PDGFAP04085 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFAP04085 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFAP04085 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFAP04085 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFAP04085 OR2A1-AS1-204ENST00000470435 602 ntBASIC22.69■■□□□ 1.22
PDGFAP04085 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PDGFAP04085 AP002414.2-202ENST00000590929 1450 ntBASIC22.68■■□□□ 1.22
PDGFAP04085 MIR4508-201ENST00000584178 70 ntBASIC22.68■■□□□ 1.22
PDGFAP04085 THA1P-201ENST00000590384 1145 ntBASIC22.68■■□□□ 1.22
PDGFAP04085 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
PDGFAP04085 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PDGFAP04085 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.67■■□□□ 1.22
PDGFAP04085 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PDGFAP04085 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
PDGFAP04085 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.66■■□□□ 1.22
PDGFAP04085 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDGFAP04085 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC22.65■■□□□ 1.22
PDGFAP04085 AL359504.2-201ENST00000605506 1601 ntBASIC22.65■■□□□ 1.22
PDGFAP04085 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
PDGFAP04085 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.65■■□□□ 1.22
PDGFAP04085 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDGFAP04085 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC22.65■■□□□ 1.22
PDGFAP04085 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.65■■□□□ 1.22
PDGFAP04085 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDGFAP04085 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
PDGFAP04085 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PDGFAP04085 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
PDGFAP04085 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
PDGFAP04085 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PDGFAP04085 AC019069.1-201ENST00000610008 1333 ntBASIC22.64■■□□□ 1.22
PDGFAP04085 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDGFAP04085 AC103724.3-201ENST00000564481 992 ntBASIC22.64■■□□□ 1.21
PDGFAP04085 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDGFAP04085 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
PDGFAP04085 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.63■■□□□ 1.21
PDGFAP04085 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC22.63■■□□□ 1.21
PDGFAP04085 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFAP04085 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.63■■□□□ 1.21
PDGFAP04085 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDGFAP04085 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PDGFAP04085 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PDGFAP04085 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.62■■□□□ 1.21
PDGFAP04085 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC22.62■■□□□ 1.21
PDGFAP04085 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PDGFAP04085 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PDGFAP04085 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
PDGFAP04085 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PDGFAP04085 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDGFAP04085 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.6■■□□□ 1.21
PDGFAP04085 AL031848.2-201ENST00000607670 837 ntBASIC22.6■■□□□ 1.21
PDGFAP04085 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PDGFAP04085 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PDGFAP04085 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PDGFAP04085 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.59■■□□□ 1.21
PDGFAP04085 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.59■■□□□ 1.21
PDGFAP04085 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
PDGFAP04085 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PDGFAP04085 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.58■■□□□ 1.21
PDGFAP04085 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PDGFAP04085 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
PDGFAP04085 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PDGFAP04085 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
PDGFAP04085 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
PDGFAP04085 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
PDGFAP04085 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.57■■□□□ 1.2
PDGFAP04085 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PDGFAP04085 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PDGFAP04085 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
PDGFAP04085 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
PDGFAP04085 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.57■■□□□ 1.2
PDGFAP04085 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC22.56■■□□□ 1.2
PDGFAP04085 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
PDGFAP04085 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
PDGFAP04085 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
PDGFAP04085 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
PDGFAP04085 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
PDGFAP04085 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
PDGFAP04085 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.55■■□□□ 1.2
PDGFAP04085 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC22.55■■□□□ 1.2
PDGFAP04085 AL356441.2-201ENST00000443009 864 ntBASIC22.55■■□□□ 1.2
PDGFAP04085 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms