Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
PDGFBP01127 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
PDGFBP01127 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PDGFBP01127 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC25.07■■□□□ 1.6
PDGFBP01127 AC131281.2-201ENST00000520478 145 ntBASIC25.07■■□□□ 1.6
PDGFBP01127 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PDGFBP01127 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.07■■□□□ 1.6
PDGFBP01127 TSPY9P-201ENST00000440215 945 ntBASIC25.06■■□□□ 1.6
PDGFBP01127 TSPY11P-201ENST00000442607 1045 ntBASIC25.06■■□□□ 1.6
PDGFBP01127 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.06■■□□□ 1.6
PDGFBP01127 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PDGFBP01127 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC25.05■■□□□ 1.6
PDGFBP01127 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PDGFBP01127 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PDGFBP01127 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PDGFBP01127 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PDGFBP01127 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
PDGFBP01127 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC25.04■■□□□ 1.6
PDGFBP01127 RPS2P7-201ENST00000447334 885 ntBASIC25.04■■□□□ 1.6
PDGFBP01127 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.04■■□□□ 1.6
PDGFBP01127 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.04■■□□□ 1.6
PDGFBP01127 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
PDGFBP01127 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
PDGFBP01127 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC25.03■■□□□ 1.6
PDGFBP01127 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PDGFBP01127 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.03■■□□□ 1.6
PDGFBP01127 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
PDGFBP01127 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.03■■□□□ 1.6
PDGFBP01127 AC092666.2-201ENST00000613287 246 ntBASIC25.03■■□□□ 1.6
PDGFBP01127 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.03■■□□□ 1.6
PDGFBP01127 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PDGFBP01127 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.02■■□□□ 1.6
PDGFBP01127 AC110285.6-201ENST00000617652 491 ntBASIC25.02■■□□□ 1.6
PDGFBP01127 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
PDGFBP01127 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PDGFBP01127 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
PDGFBP01127 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
PDGFBP01127 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
PDGFBP01127 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PDGFBP01127 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC25■■□□□ 1.59
PDGFBP01127 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25■■□□□ 1.59
PDGFBP01127 AL136116.3-201ENST00000402907 1138 ntBASIC25■■□□□ 1.59
PDGFBP01127 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25■■□□□ 1.59
PDGFBP01127 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25■■□□□ 1.59
PDGFBP01127 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
PDGFBP01127 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PDGFBP01127 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC25■■□□□ 1.59
PDGFBP01127 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PDGFBP01127 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PDGFBP01127 AC005837.3-201ENST00000612163 286 ntBASIC24.99■■□□□ 1.59
PDGFBP01127 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC24.99■■□□□ 1.59
PDGFBP01127 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
PDGFBP01127 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PDGFBP01127 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.98■■□□□ 1.59
PDGFBP01127 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PDGFBP01127 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.98■■□□□ 1.59
PDGFBP01127 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.97■■□□□ 1.59
PDGFBP01127 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
PDGFBP01127 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.97■■□□□ 1.59
PDGFBP01127 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.97■■□□□ 1.59
PDGFBP01127 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.97■■□□□ 1.59
PDGFBP01127 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PDGFBP01127 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PDGFBP01127 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PDGFBP01127 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
PDGFBP01127 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PDGFBP01127 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PDGFBP01127 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PDGFBP01127 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PDGFBP01127 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.94■■□□□ 1.58
PDGFBP01127 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PDGFBP01127 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PDGFBP01127 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC24.93■■□□□ 1.58
PDGFBP01127 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC24.93■■□□□ 1.58
PDGFBP01127 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.93■■□□□ 1.58
PDGFBP01127 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PDGFBP01127 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.93■■□□□ 1.58
PDGFBP01127 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PDGFBP01127 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PDGFBP01127 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PDGFBP01127 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PDGFBP01127 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PDGFBP01127 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PDGFBP01127 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PDGFBP01127 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
PDGFBP01127 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PDGFBP01127 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PDGFBP01127 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC24.91■■□□□ 1.58
PDGFBP01127 AC096631.2-201ENST00000436136 790 ntBASIC24.91■■□□□ 1.58
PDGFBP01127 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.91■■□□□ 1.58
PDGFBP01127 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PDGFBP01127 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PDGFBP01127 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PDGFBP01127 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PDGFBP01127 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.9■■□□□ 1.58
PDGFBP01127 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24.9■■□□□ 1.58
PDGFBP01127 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.9■■□□□ 1.58
PDGFBP01127 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PDGFBP01127 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.9■■□□□ 1.58
PDGFBP01127 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC24.89■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms