Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
SMKR1H3BMG3 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
SMKR1H3BMG3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMKR1H3BMG3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SMKR1H3BMG3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SMKR1H3BMG3 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC17.7■□□□□ 0.42
SMKR1H3BMG3 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC17.7■□□□□ 0.42
SMKR1H3BMG3 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMKR1H3BMG3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SMKR1H3BMG3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMKR1H3BMG3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SMKR1H3BMG3 CAHM-201ENST00000604200 896 ntBASIC17.69■□□□□ 0.42
SMKR1H3BMG3 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMKR1H3BMG3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMKR1H3BMG3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMKR1H3BMG3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMKR1H3BMG3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMKR1H3BMG3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMKR1H3BMG3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMKR1H3BMG3 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC17.65■□□□□ 0.42
SMKR1H3BMG3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMKR1H3BMG3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMKR1H3BMG3 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMKR1H3BMG3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMKR1H3BMG3 LINC00273-201ENST00000539813 1452 ntBASIC17.64■□□□□ 0.41
SMKR1H3BMG3 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMKR1H3BMG3 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC17.64■□□□□ 0.41
SMKR1H3BMG3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SMKR1H3BMG3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMKR1H3BMG3 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SMKR1H3BMG3 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.64■□□□□ 0.41
SMKR1H3BMG3 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC17.64■□□□□ 0.41
SMKR1H3BMG3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMKR1H3BMG3 WHAMMP3-201ENST00000611636 1609 ntBASIC17.63■□□□□ 0.41
SMKR1H3BMG3 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMKR1H3BMG3 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMKR1H3BMG3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 EI24-212ENST00000615917 1407 ntTSL 2 BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMKR1H3BMG3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 MIR762-201ENST00000390236 83 ntBASIC17.61■□□□□ 0.41
SMKR1H3BMG3 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMKR1H3BMG3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMKR1H3BMG3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMKR1H3BMG3 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMKR1H3BMG3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
SMKR1H3BMG3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMKR1H3BMG3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMKR1H3BMG3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMKR1H3BMG3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms