Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 NCF1C-201ENST00000438382 1427 ntBASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CLCF1Q9UBD9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 REXO1L11P-201ENST00000620964 1927 ntBASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 RNA5SP415-201ENST00000517246 115 ntBASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 AC034105.1-201ENST00000563488 319 ntBASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 Z83851.2-201ENST00000609564 659 ntBASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 MIR1199-201ENST00000621445 119 ntBASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 AC104109.2-201ENST00000602919 1418 ntBASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
CLCF1Q9UBD9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 ELK2BP-201ENST00000415014 1224 ntBASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 AC136632.2-201ENST00000512891 861 ntBASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 AC023511.2-201ENST00000618803 211 ntBASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 PGM5P2-202ENST00000637225 1043 ntBASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLCF1Q9UBD9 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLCF1Q9UBD9 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms