Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 TSPY14P-201ENST00000303979 915 ntBASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 AC142381.4-202ENST00000563973 229 ntBASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 NEK4P2-201ENST00000580004 1012 ntBASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 AL139327.4-201ENST00000612362 153 ntBASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 AC005915.1-201ENST00000624912 2018 ntBASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC28BQ9BUN5 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 AC046185.3-201ENST00000623228 1824 ntBASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 FAM201B-201ENST00000458407 597 ntBASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 AP000525.1-201ENST00000608286 694 ntBASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 AL157888.1-201ENST00000631930 593 ntBASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 PCDHB17P-201ENST00000539533 2393 ntBASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC28BQ9BUN5 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms