Protein–RNA interactions for Protein: Q9BQW3

EBF4, Transcription factor COE4, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF4Q9BQW3 PCDHB17P-201ENST00000539533 2393 ntBASIC17.1■□□□□ 0.33
EBF4Q9BQW3 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
EBF4Q9BQW3 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 AC011270.2-201ENST00000624293 2550 ntBASIC17.09■□□□□ 0.33
EBF4Q9BQW3 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 AL139327.4-201ENST00000612362 153 ntBASIC17.09■□□□□ 0.33
EBF4Q9BQW3 AC092865.7-201ENST00000641832 219 ntBASIC17.09■□□□□ 0.33
EBF4Q9BQW3 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 AC026691.1-201ENST00000602502 2017 ntBASIC17.09■□□□□ 0.33
EBF4Q9BQW3 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.09■□□□□ 0.33
EBF4Q9BQW3 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
EBF4Q9BQW3 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
EBF4Q9BQW3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
EBF4Q9BQW3 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
EBF4Q9BQW3 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.08■□□□□ 0.33
EBF4Q9BQW3 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.08■□□□□ 0.33
EBF4Q9BQW3 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 AC142381.4-202ENST00000563973 229 ntBASIC17.08■□□□□ 0.32
EBF4Q9BQW3 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 ITM2C-210ENST00000620962 501 ntBASIC17.08■□□□□ 0.32
EBF4Q9BQW3 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
EBF4Q9BQW3 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 AC093525.9-201ENST00000624961 1746 ntBASIC17.07■□□□□ 0.32
EBF4Q9BQW3 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.07■□□□□ 0.32
EBF4Q9BQW3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms