Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDCA3Q99618 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDCA3Q99618 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.09■□□□□ 0.49
CDCA3Q99618 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.09■□□□□ 0.49
CDCA3Q99618 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CDCA3Q99618 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDCA3Q99618 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDCA3Q99618 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CDCA3Q99618 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDCA3Q99618 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.08■□□□□ 0.49
CDCA3Q99618 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDCA3Q99618 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CDCA3Q99618 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.08■□□□□ 0.49
CDCA3Q99618 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDCA3Q99618 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CDCA3Q99618 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
CDCA3Q99618 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDCA3Q99618 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDCA3Q99618 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.08■□□□□ 0.48
CDCA3Q99618 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.08■□□□□ 0.48
CDCA3Q99618 AC107890.1-201ENST00000422478 521 ntBASIC18.08■□□□□ 0.48
CDCA3Q99618 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.08■□□□□ 0.48
CDCA3Q99618 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.08■□□□□ 0.48
CDCA3Q99618 FAM207CP-201ENST00000443486 507 ntBASIC18.08■□□□□ 0.48
CDCA3Q99618 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CDCA3Q99618 MIR4515-201ENST00000584082 81 ntBASIC18.08■□□□□ 0.48
CDCA3Q99618 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.08■□□□□ 0.48
CDCA3Q99618 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.08■□□□□ 0.48
CDCA3Q99618 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.08■□□□□ 0.48
CDCA3Q99618 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 CROCCP3-202ENST00000420820 1947 ntBASIC18.08■□□□□ 0.48
CDCA3Q99618 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CDCA3Q99618 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.07■□□□□ 0.48
CDCA3Q99618 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CDCA3Q99618 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.07■□□□□ 0.48
CDCA3Q99618 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.07■□□□□ 0.48
CDCA3Q99618 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
CDCA3Q99618 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 AC002472.2-201ENST00000442739 958 ntBASIC18.07■□□□□ 0.48
CDCA3Q99618 TSPY16P-201ENST00000449843 468 ntBASIC18.07■□□□□ 0.48
CDCA3Q99618 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CDCA3Q99618 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.07■□□□□ 0.48
CDCA3Q99618 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.07■□□□□ 0.48
CDCA3Q99618 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.07■□□□□ 0.48
CDCA3Q99618 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.07■□□□□ 0.48
CDCA3Q99618 KRT8P23-201ENST00000560090 1207 ntBASIC18.07■□□□□ 0.48
CDCA3Q99618 AC140878.1-201ENST00000565277 250 ntBASIC18.07■□□□□ 0.48
CDCA3Q99618 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.07■□□□□ 0.48
CDCA3Q99618 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.07■□□□□ 0.48
CDCA3Q99618 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.07■□□□□ 0.48
CDCA3Q99618 AC012645.4-201ENST00000610691 1061 ntBASIC18.07■□□□□ 0.48
CDCA3Q99618 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.07■□□□□ 0.48
CDCA3Q99618 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.07■□□□□ 0.48
CDCA3Q99618 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.07■□□□□ 0.48
CDCA3Q99618 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDCA3Q99618 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.07■□□□□ 0.48
CDCA3Q99618 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDCA3Q99618 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.06■□□□□ 0.48
CDCA3Q99618 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDCA3Q99618 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.06■□□□□ 0.48
CDCA3Q99618 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDCA3Q99618 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDCA3Q99618 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDCA3Q99618 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDCA3Q99618 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDCA3Q99618 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.06■□□□□ 0.48
CDCA3Q99618 AC236430.1-201ENST00000402231 743 ntBASIC18.06■□□□□ 0.48
CDCA3Q99618 SPDYE7P-202ENST00000420373 878 ntBASIC18.06■□□□□ 0.48
CDCA3Q99618 FAM58DP-201ENST00000428076 619 ntBASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms