Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS13AQ96RL7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
VPS13AQ96RL7 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
VPS13AQ96RL7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 DGCR5-201ENST00000399539 862 ntBASIC17.14■□□□□ 0.33
VPS13AQ96RL7 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
VPS13AQ96RL7 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 GMCL1P1-201ENST00000463439 1581 ntBASIC17.13■□□□□ 0.33
VPS13AQ96RL7 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 MIR658-201ENST00000385210 100 ntBASIC17.13■□□□□ 0.33
VPS13AQ96RL7 SPDYE7P-202ENST00000420373 878 ntBASIC17.13■□□□□ 0.33
VPS13AQ96RL7 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 KRT17P8-201ENST00000540749 863 ntBASIC17.13■□□□□ 0.33
VPS13AQ96RL7 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 RBPMS2P1-201ENST00000437762 623 ntBASIC17.13■□□□□ 0.33
VPS13AQ96RL7 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 AC026120.1-201ENST00000611536 926 ntBASIC17.13■□□□□ 0.33
VPS13AQ96RL7 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
VPS13AQ96RL7 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 NAA38-206ENST00000576384 424 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 AC005332.7-201ENST00000614046 2005 ntBASIC17.12■□□□□ 0.33
VPS13AQ96RL7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.12■□□□□ 0.33
VPS13AQ96RL7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms