Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ZNF540Q8NDQ6 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 AL023284.2-201ENST00000405850 579 ntBASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 SLC25A1P2-201ENST00000430693 912 ntBASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 LINC01238-205ENST00000567549 1107 ntBASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 AL512604.3-201ENST00000569583 964 ntBASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
ZNF540Q8NDQ6 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 KRT18P57-201ENST00000443599 1254 ntBASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 KRT18P35-201ENST00000510488 1269 ntBASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.27■□□□□ 0.2
ZNF540Q8NDQ6 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 AC073508.3-201ENST00000619697 1419 ntBASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.27■□□□□ 0.19
ZNF540Q8NDQ6 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 AC096733.2-201ENST00000609937 1394 ntBASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
ZNF540Q8NDQ6 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms