Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 RAB34-224ENST00000636513 888 ntTSL 5 BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 RNF165-205ENST00000588679 2904 ntBASIC12.08□□□□□ -0.48
CSMD3Q7Z407 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 VMA21-202ENST00000370361 693 ntTSL 5 BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 COX5BP2-201ENST00000392354 334 ntBASIC12.08□□□□□ -0.48
CSMD3Q7Z407 LINC00982-205ENST00000420957 435 ntBASIC12.08□□□□□ -0.48
CSMD3Q7Z407 AC107890.1-201ENST00000422478 521 ntBASIC12.08□□□□□ -0.48
CSMD3Q7Z407 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 U91328.1-201ENST00000437528 223 ntBASIC12.08□□□□□ -0.48
CSMD3Q7Z407 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CSMD3Q7Z407 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 GOLGA6L11P-201ENST00000417252 1298 ntBASIC12.07□□□□□ -0.48
CSMD3Q7Z407 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 HILS1-202ENST00000545329 423 ntBASIC12.07□□□□□ -0.48
CSMD3Q7Z407 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 CD81-202ENST00000381036 880 ntTSL 3 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 AC004890.2-204ENST00000481968 304 ntBASIC12.07□□□□□ -0.48
CSMD3Q7Z407 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 CROCCP3-202ENST00000420820 1947 ntBASIC12.07□□□□□ -0.48
CSMD3Q7Z407 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 COX5BP8-201ENST00000416911 349 ntBASIC12.07□□□□□ -0.48
CSMD3Q7Z407 AC103564.2-201ENST00000432853 1299 ntBASIC12.07□□□□□ -0.48
CSMD3Q7Z407 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 AC109462.3-201ENST00000573934 613 ntBASIC12.07□□□□□ -0.48
CSMD3Q7Z407 AL359881.2-201ENST00000602973 570 ntBASIC12.07□□□□□ -0.48
CSMD3Q7Z407 IGHV3-72-202ENST00000621503 303 ntBASIC12.07□□□□□ -0.48
CSMD3Q7Z407 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CSMD3Q7Z407 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 BASP1P1-201ENST00000430708 665 ntBASIC12.06□□□□□ -0.48
CSMD3Q7Z407 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 GGTLC5P-201ENST00000617623 998 ntBASIC12.06□□□□□ -0.48
CSMD3Q7Z407 AC007064.4-201ENST00000637740 555 ntBASIC12.06□□□□□ -0.48
CSMD3Q7Z407 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 AC135776.1-201ENST00000319817 2481 ntBASIC12.06□□□□□ -0.48
CSMD3Q7Z407 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 AL592309.1-201ENST00000443127 649 ntBASIC12.06□□□□□ -0.48
CSMD3Q7Z407 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
CSMD3Q7Z407 CXCL1P1-201ENST00000502804 216 ntBASIC12.06□□□□□ -0.48
CSMD3Q7Z407 COQ6-210ENST00000554920 649 ntTSL 3 BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms