Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 HNRNPFP1-201ENST00000391730 1133 ntBASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 THTPA-204ENST00000554970 569 ntTSL 4 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 THTPA-206ENST00000556015 535 ntTSL 3 BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC88AQ3V6T2 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 FAM58DP-201ENST00000428076 619 ntBASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 NAA50-208ENST00000497255 789 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 CYP51A1P2-201ENST00000419457 1499 ntBASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 AC004408.2-201ENST00000623613 2777 ntBASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 AC138028.4-201ENST00000564984 1845 ntBASIC21.25■□□□□ 0.99
CCDC88AQ3V6T2 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 PTCHD3P3-201ENST00000403073 906 ntBASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 AC092580.3-201ENST00000430932 139 ntBASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 AC140658.5-201ENST00000438532 169 ntBASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 AP000997.3-201ENST00000623333 2250 ntBASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 FLJ13224-201ENST00000313737 1514 ntBASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 KLF2P3-201ENST00000451977 1087 ntBASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 RN7SL692P-201ENST00000464677 288 ntBASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 AC010336.2-201ENST00000564226 506 ntBASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
CCDC88AQ3V6T2 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 PC-208ENST00000529047 1607 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 REXO1L11P-201ENST00000620964 1927 ntBASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 GK-202ENST00000378941 458 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC88AQ3V6T2 MRPS18AP1-201ENST00000414458 589 ntBASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms