Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 RASL12-203ENST00000434605 982 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC12.5□□□□□ -0.41
PRKDCP78527 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC12.5□□□□□ -0.41
PRKDCP78527 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC12.5□□□□□ -0.41
PRKDCP78527 AC008738.7-201ENST00000609744 511 ntBASIC12.5□□□□□ -0.41
PRKDCP78527 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 AL590787.1-201ENST00000568856 1315 ntBASIC12.5□□□□□ -0.41
PRKDCP78527 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12.5□□□□□ -0.41
PRKDCP78527 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC12.5□□□□□ -0.41
PRKDCP78527 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC12.5□□□□□ -0.41
PRKDCP78527 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC12.5□□□□□ -0.41
PRKDCP78527 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
PRKDCP78527 AC009336.1-201ENST00000608941 1553 ntBASIC12.5□□□□□ -0.41
PRKDCP78527 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.49□□□□□ -0.41
PRKDCP78527 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC12.49□□□□□ -0.41
PRKDCP78527 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.49□□□□□ -0.41
PRKDCP78527 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC12.49□□□□□ -0.41
PRKDCP78527 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC12.49□□□□□ -0.41
PRKDCP78527 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
PRKDCP78527 AC073592.8-201ENST00000624126 511 ntBASIC12.49□□□□□ -0.41
PRKDCP78527 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
PRKDCP78527 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
PRKDCP78527 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC12.49□□□□□ -0.41
PRKDCP78527 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.49□□□□□ -0.41
PRKDCP78527 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC12.49□□□□□ -0.41
PRKDCP78527 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC12.49□□□□□ -0.41
PRKDCP78527 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
PRKDCP78527 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC12.49□□□□□ -0.41
PRKDCP78527 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
PRKDCP78527 AL023806.1-201ENST00000603994 1649 ntBASIC12.49□□□□□ -0.41
PRKDCP78527 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
PRKDCP78527 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC12.49□□□□□ -0.41
PRKDCP78527 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC12.49□□□□□ -0.41
PRKDCP78527 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
PRKDCP78527 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 AC234783.1-201ENST00000441761 496 ntBASIC12.48□□□□□ -0.41
PRKDCP78527 AP005482.1-201ENST00000563722 1273 ntBASIC12.48□□□□□ -0.41
PRKDCP78527 COG4-212ENST00000564653 590 ntTSL 5 BASIC12.48□□□□□ -0.41
PRKDCP78527 AC109462.3-201ENST00000573934 613 ntBASIC12.48□□□□□ -0.41
PRKDCP78527 AC244093.1-201ENST00000610837 814 ntBASIC12.48□□□□□ -0.41
PRKDCP78527 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC12.48□□□□□ -0.41
PRKDCP78527 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
PRKDCP78527 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC12.48□□□□□ -0.41
PRKDCP78527 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC12.48□□□□□ -0.41
PRKDCP78527 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.48□□□□□ -0.41
PRKDCP78527 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC12.48□□□□□ -0.41
PRKDCP78527 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 CTBP2P3-201ENST00000585629 1255 ntBASIC12.48□□□□□ -0.41
PRKDCP78527 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 TECR-220ENST00000600083 1204 ntTSL 2 BASIC12.48□□□□□ -0.41
PRKDCP78527 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC12.48□□□□□ -0.41
PRKDCP78527 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PRKDCP78527 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
PRKDCP78527 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms