Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A5P29400 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.81■□□□□ 0.92
COL4A5P29400 GOLGA6L11P-201ENST00000417252 1298 ntBASIC20.81■□□□□ 0.92
COL4A5P29400 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A5P29400 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A5P29400 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.81■□□□□ 0.92
COL4A5P29400 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC20.81■□□□□ 0.92
COL4A5P29400 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
COL4A5P29400 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.81■□□□□ 0.92
COL4A5P29400 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.81■□□□□ 0.92
COL4A5P29400 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL4A5P29400 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
COL4A5P29400 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
COL4A5P29400 HMGA1P7-201ENST00000406908 502 ntBASIC20.8■□□□□ 0.92
COL4A5P29400 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A5P29400 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A5P29400 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.8■□□□□ 0.92
COL4A5P29400 GATD1-206ENST00000526325 756 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A5P29400 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
COL4A5P29400 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
COL4A5P29400 REXO1L9P-201ENST00000604264 2108 ntBASIC20.8■□□□□ 0.92
COL4A5P29400 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A5P29400 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A5P29400 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A5P29400 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A5P29400 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A5P29400 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A5P29400 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A5P29400 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL4A5P29400 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A5P29400 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A5P29400 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.8■□□□□ 0.92
COL4A5P29400 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A5P29400 SERBP1P5-201ENST00000510079 1181 ntBASIC20.8■□□□□ 0.92
COL4A5P29400 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A5P29400 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL4A5P29400 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC20.8■□□□□ 0.92
COL4A5P29400 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.8■□□□□ 0.92
COL4A5P29400 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.8■□□□□ 0.92
COL4A5P29400 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A5P29400 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
COL4A5P29400 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL4A5P29400 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A5P29400 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A5P29400 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.79■□□□□ 0.92
COL4A5P29400 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL4A5P29400 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.79■□□□□ 0.92
COL4A5P29400 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC20.79■□□□□ 0.92
COL4A5P29400 COQ9-214ENST00000567933 882 ntTSL 3 BASIC20.79■□□□□ 0.92
COL4A5P29400 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL4A5P29400 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
COL4A5P29400 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A5P29400 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A5P29400 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A5P29400 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.78■□□□□ 0.92
COL4A5P29400 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A5P29400 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
COL4A5P29400 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.78■□□□□ 0.92
COL4A5P29400 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.78■□□□□ 0.92
COL4A5P29400 AC097493.3-201ENST00000509725 367 ntBASIC20.78■□□□□ 0.92
COL4A5P29400 IGHV3-42-201ENST00000520410 361 ntBASIC20.78■□□□□ 0.92
COL4A5P29400 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A5P29400 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A5P29400 SPDYE22P-201ENST00000582158 798 ntBASIC20.78■□□□□ 0.92
COL4A5P29400 AL009183.1-201ENST00000603760 355 ntBASIC20.78■□□□□ 0.92
COL4A5P29400 WIZP1-201ENST00000531444 2299 ntBASIC20.78■□□□□ 0.92
COL4A5P29400 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A5P29400 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
COL4A5P29400 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A5P29400 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A5P29400 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A5P29400 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A5P29400 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A5P29400 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
COL4A5P29400 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A5P29400 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.78■□□□□ 0.92
COL4A5P29400 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL4A5P29400 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL4A5P29400 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
COL4A5P29400 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC20.77■□□□□ 0.92
COL4A5P29400 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms