Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX1P28360 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.08■□□□□ 0.16
MSX1P28360 AC133963.1-201ENST00000504166 1679 ntBASIC16.08■□□□□ 0.16
MSX1P28360 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSX1P28360 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
MSX1P28360 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
MSX1P28360 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.07■□□□□ 0.16
MSX1P28360 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
MSX1P28360 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
MSX1P28360 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
MSX1P28360 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.07■□□□□ 0.16
MSX1P28360 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.07■□□□□ 0.16
MSX1P28360 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.07■□□□□ 0.16
MSX1P28360 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.07■□□□□ 0.16
MSX1P28360 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.07■□□□□ 0.16
MSX1P28360 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.07■□□□□ 0.16
MSX1P28360 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.07■□□□□ 0.16
MSX1P28360 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.07■□□□□ 0.16
MSX1P28360 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.07■□□□□ 0.16
MSX1P28360 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
MSX1P28360 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
MSX1P28360 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.07■□□□□ 0.16
MSX1P28360 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.07■□□□□ 0.16
MSX1P28360 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.07■□□□□ 0.16
MSX1P28360 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.07■□□□□ 0.16
MSX1P28360 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 AC068880.1-201ENST00000507289 2297 ntBASIC16.07■□□□□ 0.16
MSX1P28360 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.07■□□□□ 0.16
MSX1P28360 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX1P28360 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
MSX1P28360 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
MSX1P28360 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
MSX1P28360 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.06■□□□□ 0.16
MSX1P28360 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
MSX1P28360 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
MSX1P28360 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.06■□□□□ 0.16
MSX1P28360 IL9RP2-201ENST00000423948 1312 ntBASIC16.06■□□□□ 0.16
MSX1P28360 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.06■□□□□ 0.16
MSX1P28360 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.06■□□□□ 0.16
MSX1P28360 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
MSX1P28360 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.06■□□□□ 0.16
MSX1P28360 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.06■□□□□ 0.16
MSX1P28360 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.06■□□□□ 0.16
MSX1P28360 RNA5SP419-201ENST00000515908 135 ntBASIC16.06■□□□□ 0.16
MSX1P28360 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.06■□□□□ 0.16
MSX1P28360 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
MSX1P28360 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.06■□□□□ 0.16
MSX1P28360 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 AL591684.3-201ENST00000605187 298 ntBASIC16.06■□□□□ 0.16
MSX1P28360 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.06■□□□□ 0.16
MSX1P28360 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.06■□□□□ 0.16
MSX1P28360 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
MSX1P28360 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
MSX1P28360 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX1P28360 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.06■□□□□ 0.16
MSX1P28360 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
MSX1P28360 REXO1L11P-201ENST00000620964 1927 ntBASIC16.06■□□□□ 0.16
MSX1P28360 LINC00304-203ENST00000565008 1864 ntBASIC16.05■□□□□ 0.16
MSX1P28360 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
MSX1P28360 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
MSX1P28360 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.05■□□□□ 0.16
MSX1P28360 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
MSX1P28360 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.05■□□□□ 0.16
MSX1P28360 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
MSX1P28360 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSX1P28360 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms