Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LYSMD4-203ENST00000378904 2122 ntBASIC18.1■□□□□ 0.49
HMGA1P17096 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.1■□□□□ 0.49
HMGA1P17096 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
HMGA1P17096 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGA1P17096 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
HMGA1P17096 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HMGA1P17096 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.09■□□□□ 0.49
HMGA1P17096 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGA1P17096 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGA1P17096 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGA1P17096 AC092183.1-201ENST00000469884 875 ntBASIC18.09■□□□□ 0.49
HMGA1P17096 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGA1P17096 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGA1P17096 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGA1P17096 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGA1P17096 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGA1P17096 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGA1P17096 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGA1P17096 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGA1P17096 AL355312.1-201ENST00000407115 2176 ntBASIC18.08■□□□□ 0.49
HMGA1P17096 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGA1P17096 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HMGA1P17096 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGA1P17096 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.08■□□□□ 0.49
HMGA1P17096 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.08■□□□□ 0.49
HMGA1P17096 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGA1P17096 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
HMGA1P17096 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
HMGA1P17096 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.08■□□□□ 0.48
HMGA1P17096 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.08■□□□□ 0.48
HMGA1P17096 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGA1P17096 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.08■□□□□ 0.48
HMGA1P17096 AC096734.2-201ENST00000562054 433 ntBASIC18.08■□□□□ 0.48
HMGA1P17096 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGA1P17096 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGA1P17096 AC010507.1-201ENST00000633895 436 ntBASIC18.08■□□□□ 0.48
HMGA1P17096 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.08■□□□□ 0.48
HMGA1P17096 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGA1P17096 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
HMGA1P17096 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
HMGA1P17096 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.08■□□□□ 0.48
HMGA1P17096 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
HMGA1P17096 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGA1P17096 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
HMGA1P17096 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.08■□□□□ 0.48
HMGA1P17096 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGA1P17096 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
HMGA1P17096 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGA1P17096 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGA1P17096 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGA1P17096 RHOQP3-201ENST00000437982 621 ntBASIC18.07■□□□□ 0.48
HMGA1P17096 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGA1P17096 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGA1P17096 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGA1P17096 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 AL390961.4-201ENST00000623958 2535 ntBASIC18.07■□□□□ 0.48
HMGA1P17096 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
HMGA1P17096 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGA1P17096 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGA1P17096 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
HMGA1P17096 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
HMGA1P17096 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGA1P17096 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HMGA1P17096 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGA1P17096 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGA1P17096 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGA1P17096 PAWRP1-201ENST00000451083 565 ntBASIC18.06■□□□□ 0.48
HMGA1P17096 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms