Protein–RNA interactions for Protein: P13569

CFTR, Cystic fibrosis transmembrane conductance regulator, humanhuman

Predictions only

Length 1,480 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFTRP13569 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CFTRP13569 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC29.67■■■□□ 2.34
CFTRP13569 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
CFTRP13569 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
CFTRP13569 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC29.66■■■□□ 2.34
CFTRP13569 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
CFTRP13569 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
CFTRP13569 HNRNPRP1-201ENST00000453465 1695 ntBASIC29.66■■■□□ 2.34
CFTRP13569 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC29.66■■■□□ 2.34
CFTRP13569 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC29.66■■■□□ 2.34
CFTRP13569 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CFTRP13569 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC29.66■■■□□ 2.34
CFTRP13569 TMPRSS11CP-201ENST00000453277 683 ntBASIC29.66■■■□□ 2.34
CFTRP13569 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
CFTRP13569 AC005412.3-201ENST00000580309 715 ntBASIC29.66■■■□□ 2.34
CFTRP13569 AL359881.2-201ENST00000602973 570 ntBASIC29.66■■■□□ 2.34
CFTRP13569 COQ4-205ENST00000609948 956 ntTSL 2 BASIC29.66■■■□□ 2.34
CFTRP13569 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CFTRP13569 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC29.66■■■□□ 2.34
CFTRP13569 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
CFTRP13569 UXT-AS1-201ENST00000590504 1525 ntBASIC29.65■■■□□ 2.34
CFTRP13569 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CFTRP13569 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC29.65■■■□□ 2.34
CFTRP13569 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CFTRP13569 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC29.65■■■□□ 2.34
CFTRP13569 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC29.65■■■□□ 2.34
CFTRP13569 PIN1P1-201ENST00000412108 996 ntBASIC29.65■■■□□ 2.34
CFTRP13569 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC29.65■■■□□ 2.34
CFTRP13569 AC241585.1-201ENST00000433527 519 ntBASIC29.65■■■□□ 2.34
CFTRP13569 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CFTRP13569 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CFTRP13569 AC009118.2-201ENST00000613275 655 ntBASIC29.65■■■□□ 2.34
CFTRP13569 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CFTRP13569 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
CFTRP13569 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
CFTRP13569 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC29.64■■■□□ 2.34
CFTRP13569 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
CFTRP13569 MIR346-201ENST00000362234 95 ntBASIC29.64■■■□□ 2.34
CFTRP13569 U91328.1-201ENST00000437528 223 ntBASIC29.64■■■□□ 2.34
CFTRP13569 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC29.64■■■□□ 2.34
CFTRP13569 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC29.64■■■□□ 2.34
CFTRP13569 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC29.64■■■□□ 2.34
CFTRP13569 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC29.64■■■□□ 2.34
CFTRP13569 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC29.64■■■□□ 2.33
CFTRP13569 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.33
CFTRP13569 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC29.64■■■□□ 2.33
CFTRP13569 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC29.64■■■□□ 2.33
CFTRP13569 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC29.63■■■□□ 2.33
CFTRP13569 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CFTRP13569 REXO1L11P-201ENST00000620964 1927 ntBASIC29.63■■■□□ 2.33
CFTRP13569 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CFTRP13569 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CFTRP13569 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
CFTRP13569 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CFTRP13569 SPTLC1P1-201ENST00000447199 261 ntBASIC29.63■■■□□ 2.33
CFTRP13569 IGHV3-62-201ENST00000520057 340 ntBASIC29.63■■■□□ 2.33
CFTRP13569 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC29.63■■■□□ 2.33
CFTRP13569 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
CFTRP13569 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC29.63■■■□□ 2.33
CFTRP13569 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC29.63■■■□□ 2.33
CFTRP13569 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC29.63■■■□□ 2.33
CFTRP13569 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC29.63■■■□□ 2.33
CFTRP13569 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC29.63■■■□□ 2.33
CFTRP13569 AC100757.3-201ENST00000622361 1406 ntBASIC29.63■■■□□ 2.33
CFTRP13569 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CFTRP13569 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC29.63■■■□□ 2.33
CFTRP13569 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC29.63■■■□□ 2.33
CFTRP13569 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC29.63■■■□□ 2.33
CFTRP13569 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC29.63■■■□□ 2.33
CFTRP13569 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
CFTRP13569 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC29.62■■■□□ 2.33
CFTRP13569 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC29.62■■■□□ 2.33
CFTRP13569 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CFTRP13569 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CFTRP13569 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC29.62■■■□□ 2.33
CFTRP13569 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC29.62■■■□□ 2.33
CFTRP13569 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
CFTRP13569 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CFTRP13569 WASH6P-202ENST00000359512 1437 ntBASIC29.62■■■□□ 2.33
CFTRP13569 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CFTRP13569 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC29.62■■■□□ 2.33
CFTRP13569 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC29.62■■■□□ 2.33
CFTRP13569 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
CFTRP13569 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CFTRP13569 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CFTRP13569 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
CFTRP13569 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC29.61■■■□□ 2.33
CFTRP13569 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC29.61■■■□□ 2.33
CFTRP13569 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CFTRP13569 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC29.61■■■□□ 2.33
CFTRP13569 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC29.61■■■□□ 2.33
CFTRP13569 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC29.61■■■□□ 2.33
CFTRP13569 MIR3909-201ENST00000579518 119 ntBASIC29.61■■■□□ 2.33
CFTRP13569 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC29.61■■■□□ 2.33
CFTRP13569 AC008267.7-201ENST00000624570 1194 ntBASIC29.61■■■□□ 2.33
CFTRP13569 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC29.61■■■□□ 2.33
CFTRP13569 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CFTRP13569 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CFTRP13569 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CFTRP13569 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC29.61■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms