Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC4P09017 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HOXC4P09017 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.03■□□□□ 0.32
HOXC4P09017 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HOXC4P09017 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.03■□□□□ 0.32
HOXC4P09017 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.02■□□□□ 0.32
HOXC4P09017 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
HOXC4P09017 KRT18P13-201ENST00000400056 1290 ntBASIC17.02■□□□□ 0.32
HOXC4P09017 BX842568.4-201ENST00000421222 227 ntBASIC17.02■□□□□ 0.32
HOXC4P09017 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.02■□□□□ 0.32
HOXC4P09017 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.02■□□□□ 0.32
HOXC4P09017 AC007967.2-201ENST00000432613 625 ntBASIC17.02■□□□□ 0.32
HOXC4P09017 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.02■□□□□ 0.32
HOXC4P09017 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.02■□□□□ 0.32
HOXC4P09017 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.02■□□□□ 0.32
HOXC4P09017 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HOXC4P09017 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.02■□□□□ 0.32
HOXC4P09017 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.02■□□□□ 0.32
HOXC4P09017 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.02■□□□□ 0.32
HOXC4P09017 GPALPP1-207ENST00000611650 899 ntBASIC17.02■□□□□ 0.32
HOXC4P09017 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HOXC4P09017 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC4P09017 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC4P09017 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC4P09017 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC4P09017 AL355312.1-201ENST00000407115 2176 ntBASIC17.02■□□□□ 0.31
HOXC4P09017 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC4P09017 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.02■□□□□ 0.31
HOXC4P09017 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.02■□□□□ 0.31
HOXC4P09017 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC4P09017 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HOXC4P09017 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC4P09017 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC4P09017 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HOXC4P09017 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HOXC4P09017 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HOXC4P09017 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.01■□□□□ 0.31
HOXC4P09017 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC4P09017 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HOXC4P09017 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 AC004832.2-201ENST00000426397 482 ntBASIC17.01■□□□□ 0.31
HOXC4P09017 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HOXC4P09017 PAWRP1-201ENST00000451083 565 ntBASIC17.01■□□□□ 0.31
HOXC4P09017 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC4P09017 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.01■□□□□ 0.31
HOXC4P09017 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.01■□□□□ 0.31
HOXC4P09017 MIR4751-201ENST00000578027 74 ntBASIC17.01■□□□□ 0.31
HOXC4P09017 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
HOXC4P09017 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC4P09017 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.01■□□□□ 0.31
HOXC4P09017 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.01■□□□□ 0.31
HOXC4P09017 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.01■□□□□ 0.31
HOXC4P09017 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.01■□□□□ 0.31
HOXC4P09017 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
HOXC4P09017 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HOXC4P09017 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17■□□□□ 0.31
HOXC4P09017 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17■□□□□ 0.31
HOXC4P09017 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 KRT18P2-201ENST00000447938 1258 ntBASIC17■□□□□ 0.31
HOXC4P09017 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17■□□□□ 0.31
HOXC4P09017 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17■□□□□ 0.31
HOXC4P09017 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17■□□□□ 0.31
HOXC4P09017 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17■□□□□ 0.31
HOXC4P09017 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17■□□□□ 0.31
HOXC4P09017 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms