Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 WASH6P-202ENST00000359512 1437 ntBASIC10.79□□□□□ -0.68
APOBP04114 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC10.79□□□□□ -0.68
APOBP04114 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
APOBP04114 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC10.79□□□□□ -0.68
APOBP04114 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC10.79□□□□□ -0.68
APOBP04114 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 GPER1-207ENST00000619052 571 ntTSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
APOBP04114 AP3S2-216ENST00000617003 1561 ntBASIC10.79□□□□□ -0.68
APOBP04114 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
APOBP04114 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC10.79□□□□□ -0.68
APOBP04114 MIR6805-201ENST00000615055 62 ntBASIC10.79□□□□□ -0.68
APOBP04114 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
APOBP04114 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC10.79□□□□□ -0.68
APOBP04114 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC10.79□□□□□ -0.68
APOBP04114 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC10.79□□□□□ -0.68
APOBP04114 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC10.79□□□□□ -0.68
APOBP04114 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC10.79□□□□□ -0.68
APOBP04114 AC008494.3-201ENST00000606615 944 ntBASIC10.79□□□□□ -0.68
APOBP04114 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 AL020996.1-203ENST00000536896 2307 ntBASIC10.79□□□□□ -0.68
APOBP04114 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
APOBP04114 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC10.79□□□□□ -0.68
APOBP04114 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC10.78□□□□□ -0.68
APOBP04114 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
APOBP04114 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC10.78□□□□□ -0.68
APOBP04114 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC10.78□□□□□ -0.68
APOBP04114 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC10.78□□□□□ -0.68
APOBP04114 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC10.78□□□□□ -0.68
APOBP04114 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC10.78□□□□□ -0.68
APOBP04114 AC084346.2-201ENST00000607097 949 ntBASIC10.78□□□□□ -0.68
APOBP04114 MIR6787-201ENST00000616675 61 ntBASIC10.78□□□□□ -0.68
APOBP04114 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC10.78□□□□□ -0.68
APOBP04114 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 ACTG1P4-201ENST00000425123 1122 ntBASIC10.78□□□□□ -0.68
APOBP04114 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC10.78□□□□□ -0.68
APOBP04114 AC069120.2-201ENST00000524091 540 ntBASIC10.78□□□□□ -0.68
APOBP04114 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
APOBP04114 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC10.78□□□□□ -0.68
APOBP04114 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
APOBP04114 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC10.78□□□□□ -0.68
APOBP04114 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC10.78□□□□□ -0.68
APOBP04114 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC10.78□□□□□ -0.68
APOBP04114 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
APOBP04114 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
APOBP04114 IFT20-216ENST00000588477 774 ntTSL 5 BASIC10.78□□□□□ -0.68
APOBP04114 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
APOBP04114 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms