Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
RNF40O75150 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 TSPY19P-201ENST00000418461 509 ntBASIC18.96■□□□□ 0.63
RNF40O75150 TSPY18P-201ENST00000441642 509 ntBASIC18.96■□□□□ 0.63
RNF40O75150 EMBP1-201ENST00000458200 901 ntBASIC18.96■□□□□ 0.63
RNF40O75150 TOB2P1-201ENST00000469761 992 ntBASIC18.96■□□□□ 0.63
RNF40O75150 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 AC010240.3-201ENST00000607688 395 ntBASIC18.96■□□□□ 0.63
RNF40O75150 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.96■□□□□ 0.63
RNF40O75150 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 AC006116.8-202ENST00000587620 1550 ntBASIC18.96■□□□□ 0.63
RNF40O75150 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RNF40O75150 AL162727.3-201ENST00000635661 2787 ntBASIC18.96■□□□□ 0.63
RNF40O75150 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.96■□□□□ 0.63
RNF40O75150 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RNF40O75150 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
RNF40O75150 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.95■□□□□ 0.62
RNF40O75150 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.95■□□□□ 0.62
RNF40O75150 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.95■□□□□ 0.62
RNF40O75150 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 PVRIG2P-201ENST00000435460 978 ntBASIC18.95■□□□□ 0.62
RNF40O75150 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.95■□□□□ 0.62
RNF40O75150 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.95■□□□□ 0.62
RNF40O75150 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.95■□□□□ 0.62
RNF40O75150 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
RNF40O75150 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 Z83836.1-201ENST00000624605 1642 ntBASIC18.95■□□□□ 0.62
RNF40O75150 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.95■□□□□ 0.62
RNF40O75150 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF40O75150 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.95■□□□□ 0.62
RNF40O75150 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
RNF40O75150 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF40O75150 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF40O75150 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF40O75150 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF40O75150 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF40O75150 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.94■□□□□ 0.62
RNF40O75150 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.94■□□□□ 0.62
RNF40O75150 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 AC104390.1-201ENST00000555663 520 ntBASIC18.94■□□□□ 0.62
RNF40O75150 AL121772.3-201ENST00000610840 674 ntBASIC18.94■□□□□ 0.62
RNF40O75150 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 AL391005.1-201ENST00000623953 2435 ntBASIC18.94■□□□□ 0.62
RNF40O75150 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
RNF40O75150 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF40O75150 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
RNF40O75150 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
RNF40O75150 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF40O75150 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF40O75150 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
RNF40O75150 KRT8P7-201ENST00000533003 1432 ntBASIC18.93■□□□□ 0.62
RNF40O75150 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF40O75150 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF40O75150 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF40O75150 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.93■□□□□ 0.62
RNF40O75150 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF40O75150 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF40O75150 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.93■□□□□ 0.62
RNF40O75150 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms