Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.79■□□□□ 0.44
HOXC11O43248 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
HOXC11O43248 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.79■□□□□ 0.44
HOXC11O43248 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.79■□□□□ 0.44
HOXC11O43248 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.79■□□□□ 0.44
HOXC11O43248 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HOXC11O43248 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
HOXC11O43248 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HOXC11O43248 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
HOXC11O43248 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HOXC11O43248 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 IGLL3P-201ENST00000412472 434 ntBASIC17.78■□□□□ 0.44
HOXC11O43248 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.78■□□□□ 0.44
HOXC11O43248 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.78■□□□□ 0.44
HOXC11O43248 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.78■□□□□ 0.44
HOXC11O43248 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.78■□□□□ 0.44
HOXC11O43248 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.78■□□□□ 0.44
HOXC11O43248 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
HOXC11O43248 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.78■□□□□ 0.44
HOXC11O43248 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.78■□□□□ 0.44
HOXC11O43248 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HOXC11O43248 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HOXC11O43248 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
HOXC11O43248 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.77■□□□□ 0.44
HOXC11O43248 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
HOXC11O43248 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HOXC11O43248 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.77■□□□□ 0.44
HOXC11O43248 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
HOXC11O43248 AC046185.3-201ENST00000623228 1824 ntBASIC17.77■□□□□ 0.44
HOXC11O43248 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
HOXC11O43248 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
HOXC11O43248 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 AC004967.1-201ENST00000453589 447 ntBASIC17.77■□□□□ 0.44
HOXC11O43248 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.77■□□□□ 0.44
HOXC11O43248 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.77■□□□□ 0.44
HOXC11O43248 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.44
HOXC11O43248 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.77■□□□□ 0.44
HOXC11O43248 LINC01451-201ENST00000623792 534 ntBASIC17.77■□□□□ 0.44
HOXC11O43248 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HOXC11O43248 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.77■□□□□ 0.44
HOXC11O43248 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HOXC11O43248 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.77■□□□□ 0.43
HOXC11O43248 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HOXC11O43248 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HOXC11O43248 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.77■□□□□ 0.43
HOXC11O43248 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
HOXC11O43248 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
HOXC11O43248 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HOXC11O43248 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC11O43248 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC11O43248 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC11O43248 AL590787.1-201ENST00000568856 1315 ntBASIC17.76■□□□□ 0.43
HOXC11O43248 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC11O43248 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
HOXC11O43248 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.76■□□□□ 0.43
HOXC11O43248 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC11O43248 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
HOXC11O43248 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HOXC11O43248 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
HOXC11O43248 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
HOXC11O43248 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
HOXC11O43248 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.76■□□□□ 0.43
HOXC11O43248 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.76■□□□□ 0.43
HOXC11O43248 AC018845.2-201ENST00000568326 409 ntBASIC17.76■□□□□ 0.43
HOXC11O43248 OR7E47P-204ENST00000575924 449 ntBASIC17.76■□□□□ 0.43
HOXC11O43248 AL139327.4-201ENST00000612362 153 ntBASIC17.76■□□□□ 0.43
HOXC11O43248 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HOXC11O43248 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
HOXC11O43248 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC11O43248 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC11O43248 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC11O43248 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC11O43248 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC11O43248 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.76■□□□□ 0.43
HOXC11O43248 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HOXC11O43248 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.76■□□□□ 0.43
HOXC11O43248 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms