Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
CLDN3O15551 AL139288.1-201ENST00000623748 933 ntBASIC19.16■□□□□ 0.66
CLDN3O15551 TP73-AS1-207ENST00000624167 988 ntBASIC19.16■□□□□ 0.66
CLDN3O15551 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CLDN3O15551 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.16■□□□□ 0.66
CLDN3O15551 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CLDN3O15551 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CLDN3O15551 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CLDN3O15551 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.16■□□□□ 0.66
CLDN3O15551 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.15■□□□□ 0.66
CLDN3O15551 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
CLDN3O15551 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.15■□□□□ 0.66
CLDN3O15551 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.15■□□□□ 0.66
CLDN3O15551 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 FAM197Y8-203ENST00000450145 560 ntBASIC19.15■□□□□ 0.66
CLDN3O15551 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CLDN3O15551 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.15■□□□□ 0.66
CLDN3O15551 STK25P1-201ENST00000585406 838 ntBASIC19.15■□□□□ 0.66
CLDN3O15551 NKAPP1-205ENST00000585790 367 ntBASIC19.15■□□□□ 0.66
CLDN3O15551 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.15■□□□□ 0.66
CLDN3O15551 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.15■□□□□ 0.66
CLDN3O15551 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 GNAS-203ENST00000306120 1878 ntBASIC19.15■□□□□ 0.66
CLDN3O15551 LINC00304-203ENST00000565008 1864 ntBASIC19.15■□□□□ 0.66
CLDN3O15551 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.15■□□□□ 0.66
CLDN3O15551 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.15■□□□□ 0.66
CLDN3O15551 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.15■□□□□ 0.66
CLDN3O15551 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLDN3O15551 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CLDN3O15551 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CLDN3O15551 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
CLDN3O15551 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.14■□□□□ 0.66
CLDN3O15551 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.14■□□□□ 0.65
CLDN3O15551 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CLDN3O15551 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CLDN3O15551 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLDN3O15551 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLDN3O15551 AC003669.1-201ENST00000334569 611 ntBASIC19.14■□□□□ 0.65
CLDN3O15551 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.14■□□□□ 0.65
CLDN3O15551 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.14■□□□□ 0.65
CLDN3O15551 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLDN3O15551 KLF4P1-201ENST00000412782 1185 ntBASIC19.14■□□□□ 0.65
CLDN3O15551 SPDYE21P-201ENST00000413323 827 ntBASIC19.14■□□□□ 0.65
CLDN3O15551 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.14■□□□□ 0.65
CLDN3O15551 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.14■□□□□ 0.65
CLDN3O15551 SART3-203ENST00000546611 1184 ntBASIC19.14■□□□□ 0.65
CLDN3O15551 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.14■□□□□ 0.65
CLDN3O15551 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.14■□□□□ 0.65
CLDN3O15551 LINC00896-202ENST00000609602 2128 ntBASIC19.14■□□□□ 0.65
CLDN3O15551 AC073592.4-201ENST00000623827 446 ntBASIC19.14■□□□□ 0.65
CLDN3O15551 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.14■□□□□ 0.65
CLDN3O15551 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLDN3O15551 SIGLEC16-201ENST00000599858 1437 ntBASIC19.14■□□□□ 0.65
CLDN3O15551 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CLDN3O15551 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLDN3O15551 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.14■□□□□ 0.65
CLDN3O15551 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLDN3O15551 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.14■□□□□ 0.65
CLDN3O15551 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLDN3O15551 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLDN3O15551 HLA-J-201ENST00000462773 1622 ntBASIC19.14■□□□□ 0.65
CLDN3O15551 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLDN3O15551 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.13■□□□□ 0.65
CLDN3O15551 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CLDN3O15551 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.13■□□□□ 0.65
CLDN3O15551 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.13■□□□□ 0.65
CLDN3O15551 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.13■□□□□ 0.65
CLDN3O15551 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CLDN3O15551 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 AL020989.1-201ENST00000422979 469 ntBASIC19.13■□□□□ 0.65
CLDN3O15551 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.13■□□□□ 0.65
CLDN3O15551 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLDN3O15551 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms