Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.34
CUX2O14529 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC29.64■■■□□ 2.34
CUX2O14529 MIR6869-201ENST00000619434 62 ntBASIC29.64■■■□□ 2.34
CUX2O14529 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC29.64■■■□□ 2.34
CUX2O14529 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
CUX2O14529 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX2O14529 PI4KAP1-204ENST00000612579 1703 ntBASIC29.64■■■□□ 2.34
CUX2O14529 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
CUX2O14529 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
CUX2O14529 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC29.63■■■□□ 2.33
CUX2O14529 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CUX2O14529 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
CUX2O14529 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
CUX2O14529 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CUX2O14529 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC29.63■■■□□ 2.33
CUX2O14529 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC29.63■■■□□ 2.33
CUX2O14529 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC29.63■■■□□ 2.33
CUX2O14529 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC29.63■■■□□ 2.33
CUX2O14529 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CUX2O14529 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC29.63■■■□□ 2.33
CUX2O14529 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC29.63■■■□□ 2.33
CUX2O14529 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
CUX2O14529 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CUX2O14529 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CUX2O14529 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC29.63■■■□□ 2.33
CUX2O14529 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CUX2O14529 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC29.62■■■□□ 2.33
CUX2O14529 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC29.62■■■□□ 2.33
CUX2O14529 AC011495.1-201ENST00000498085 584 ntBASIC29.62■■■□□ 2.33
CUX2O14529 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC29.62■■■□□ 2.33
CUX2O14529 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC29.62■■■□□ 2.33
CUX2O14529 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC29.62■■■□□ 2.33
CUX2O14529 MIR6727-201ENST00000620702 65 ntBASIC29.62■■■□□ 2.33
CUX2O14529 AL109936.8-201ENST00000641772 604 ntBASIC29.62■■■□□ 2.33
CUX2O14529 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CUX2O14529 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CUX2O14529 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC29.61■■■□□ 2.33
CUX2O14529 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CUX2O14529 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC29.61■■■□□ 2.33
CUX2O14529 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
CUX2O14529 AC007541.1-201ENST00000570282 1469 ntBASIC29.61■■■□□ 2.33
CUX2O14529 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CUX2O14529 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
CUX2O14529 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CUX2O14529 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC29.61■■■□□ 2.33
CUX2O14529 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CUX2O14529 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CUX2O14529 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CUX2O14529 HNRNPA3P1-201ENST00000401429 1139 ntBASIC29.61■■■□□ 2.33
CUX2O14529 HNRNPA3P5-201ENST00000455201 833 ntBASIC29.61■■■□□ 2.33
CUX2O14529 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC29.61■■■□□ 2.33
CUX2O14529 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC29.61■■■□□ 2.33
CUX2O14529 RNA5SP423-201ENST00000517127 109 ntBASIC29.61■■■□□ 2.33
CUX2O14529 RHOQP1-201ENST00000555758 579 ntBASIC29.61■■■□□ 2.33
CUX2O14529 COG4-212ENST00000564653 590 ntTSL 5 BASIC29.61■■■□□ 2.33
CUX2O14529 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC29.61■■■□□ 2.33
CUX2O14529 AL645728.2-201ENST00000641974 660 ntBASIC29.61■■■□□ 2.33
CUX2O14529 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC29.6■■■□□ 2.33
CUX2O14529 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
CUX2O14529 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC29.6■■■□□ 2.33
CUX2O14529 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC29.6■■■□□ 2.33
CUX2O14529 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX2O14529 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX2O14529 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX2O14529 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX2O14529 LINC00982-205ENST00000420957 435 ntBASIC29.6■■■□□ 2.33
CUX2O14529 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC29.6■■■□□ 2.33
CUX2O14529 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC29.6■■■□□ 2.33
CUX2O14529 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC29.6■■■□□ 2.33
CUX2O14529 ESPNP-201ENST00000270691 2015 ntBASIC29.6■■■□□ 2.33
CUX2O14529 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX2O14529 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX2O14529 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
CUX2O14529 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC29.6■■■□□ 2.33
CUX2O14529 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX2O14529 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC29.59■■■□□ 2.33
CUX2O14529 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
CUX2O14529 GMCL1P1-201ENST00000463439 1581 ntBASIC29.59■■■□□ 2.33
CUX2O14529 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
CUX2O14529 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC29.59■■■□□ 2.33
CUX2O14529 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
CUX2O14529 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC29.59■■■□□ 2.33
CUX2O14529 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC29.59■■■□□ 2.33
CUX2O14529 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC29.59■■■□□ 2.33
CUX2O14529 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC29.59■■■□□ 2.33
CUX2O14529 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC29.59■■■□□ 2.33
CUX2O14529 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC29.59■■■□□ 2.33
CUX2O14529 PRR29-204ENST00000577953 565 ntTSL 4 BASIC29.59■■■□□ 2.33
CUX2O14529 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC29.59■■■□□ 2.33
CUX2O14529 AC008738.7-201ENST00000609744 511 ntBASIC29.59■■■□□ 2.33
CUX2O14529 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CUX2O14529 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
CUX2O14529 AC093010.1-201ENST00000473625 1624 ntBASIC29.58■■■□□ 2.33
CUX2O14529 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC29.58■■■□□ 2.33
CUX2O14529 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CUX2O14529 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
CUX2O14529 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC29.58■■■□□ 2.33
CUX2O14529 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC29.58■■■□□ 2.33
CUX2O14529 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CUX2O14529 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms