Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.63■□□□□ 0.25
UPK1AO00322 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
UPK1AO00322 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.63■□□□□ 0.25
UPK1AO00322 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.63■□□□□ 0.25
UPK1AO00322 RN7SL606P-201ENST00000472779 293 ntBASIC16.63■□□□□ 0.25
UPK1AO00322 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.63■□□□□ 0.25
UPK1AO00322 KRT8P26-201ENST00000534154 1276 ntBASIC16.63■□□□□ 0.25
UPK1AO00322 AC087388.1-201ENST00000571370 1112 ntBASIC16.63■□□□□ 0.25
UPK1AO00322 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.63■□□□□ 0.25
UPK1AO00322 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.63■□□□□ 0.25
UPK1AO00322 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.63■□□□□ 0.25
UPK1AO00322 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.63■□□□□ 0.25
UPK1AO00322 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
UPK1AO00322 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.63■□□□□ 0.25
UPK1AO00322 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
UPK1AO00322 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
UPK1AO00322 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.62■□□□□ 0.25
UPK1AO00322 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.62■□□□□ 0.25
UPK1AO00322 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.62■□□□□ 0.25
UPK1AO00322 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.62■□□□□ 0.25
UPK1AO00322 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
UPK1AO00322 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
UPK1AO00322 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
UPK1AO00322 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.62■□□□□ 0.25
UPK1AO00322 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.62■□□□□ 0.25
UPK1AO00322 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.62■□□□□ 0.25
UPK1AO00322 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.62■□□□□ 0.25
UPK1AO00322 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.62■□□□□ 0.25
UPK1AO00322 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 AC138932.1-201ENST00000534164 6830 ntBASIC16.62■□□□□ 0.25
UPK1AO00322 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.62■□□□□ 0.25
UPK1AO00322 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
UPK1AO00322 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
UPK1AO00322 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.62■□□□□ 0.25
UPK1AO00322 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.61■□□□□ 0.25
UPK1AO00322 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
UPK1AO00322 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.61■□□□□ 0.25
UPK1AO00322 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
UPK1AO00322 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.61■□□□□ 0.25
UPK1AO00322 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.61■□□□□ 0.25
UPK1AO00322 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.61■□□□□ 0.25
UPK1AO00322 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.61■□□□□ 0.25
UPK1AO00322 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.61■□□□□ 0.25
UPK1AO00322 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
UPK1AO00322 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.61■□□□□ 0.25
UPK1AO00322 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.61■□□□□ 0.25
UPK1AO00322 AC090616.6-201ENST00000582640 721 ntBASIC16.61■□□□□ 0.25
UPK1AO00322 AL592071.1-201ENST00000611956 408 ntBASIC16.61■□□□□ 0.25
UPK1AO00322 AC116407.4-201ENST00000623319 1061 ntBASIC16.61■□□□□ 0.25
UPK1AO00322 AC124864.1-201ENST00000623408 392 ntBASIC16.61■□□□□ 0.25
UPK1AO00322 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
UPK1AO00322 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
UPK1AO00322 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.61■□□□□ 0.25
UPK1AO00322 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.61■□□□□ 0.25
UPK1AO00322 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.61■□□□□ 0.25
UPK1AO00322 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
UPK1AO00322 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
UPK1AO00322 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
UPK1AO00322 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 AC060834.1-201ENST00000443027 2032 ntBASIC16.6■□□□□ 0.25
UPK1AO00322 FLJ38576-201ENST00000623820 2459 ntBASIC16.6■□□□□ 0.25
UPK1AO00322 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
UPK1AO00322 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms