Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TRAV5A0A0B4J249 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
TRAV5A0A0B4J249 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
TRAV5A0A0B4J249 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
TRAV5A0A0B4J249 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
TRAV5A0A0B4J249 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
TRAV5A0A0B4J249 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 AC008741.2-201ENST00000612792 3115 ntBASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
TRAV5A0A0B4J249 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
TRAV5A0A0B4J249 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.23
TRAV5A0A0B4J249 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
TRAV5A0A0B4J249 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 AC016396.2-201ENST00000562575 1417 ntBASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 AL139384.1-201ENST00000612143 3047 ntBASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 TSPY14P-201ENST00000303979 915 ntBASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
TRAV5A0A0B4J249 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms