Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 AC079781.4-201ENST00000641908 219 ntBASIC20.6■□□□□ 0.89
DDX4Q9NQI0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
DDX4Q9NQI0 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 CD82-202ENST00000342935 967 ntTSL 5 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 AL139327.4-201ENST00000612362 153 ntBASIC20.59■□□□□ 0.89
DDX4Q9NQI0 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 AC025580.3-201ENST00000617932 1424 ntBASIC20.59■□□□□ 0.89
DDX4Q9NQI0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.59■□□□□ 0.89
DDX4Q9NQI0 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 AL354751.1-201ENST00000412768 1863 ntBASIC20.58■□□□□ 0.89
DDX4Q9NQI0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
DDX4Q9NQI0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
DDX4Q9NQI0 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
DDX4Q9NQI0 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
DDX4Q9NQI0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
DDX4Q9NQI0 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
DDX4Q9NQI0 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
DDX4Q9NQI0 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.58■□□□□ 0.88
DDX4Q9NQI0 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 AC012317.2-201ENST00000623305 2251 ntBASIC20.57■□□□□ 0.88
DDX4Q9NQI0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.57■□□□□ 0.88
DDX4Q9NQI0 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 LINC00304-203ENST00000565008 1864 ntBASIC20.57■□□□□ 0.88
DDX4Q9NQI0 AL031432.2-201ENST00000566714 459 ntBASIC20.57■□□□□ 0.88
DDX4Q9NQI0 AL928711.1-201ENST00000570165 459 ntBASIC20.57■□□□□ 0.88
DDX4Q9NQI0 AC027796.2-201ENST00000575326 344 ntBASIC20.57■□□□□ 0.88
DDX4Q9NQI0 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DDX4Q9NQI0 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
DDX4Q9NQI0 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
DDX4Q9NQI0 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
DDX4Q9NQI0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DDX4Q9NQI0 AC006116.8-202ENST00000587620 1550 ntBASIC20.56■□□□□ 0.88
DDX4Q9NQI0 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
DDX4Q9NQI0 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
DDX4Q9NQI0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
DDX4Q9NQI0 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.56■□□□□ 0.88
DDX4Q9NQI0 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms