Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 SART3-203ENST00000546611 1184 ntBASIC20.68■□□□□ 0.9
RNF41Q9H4P4 AL160237.2-201ENST00000556165 472 ntBASIC20.68■□□□□ 0.9
RNF41Q9H4P4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 AC104692.2-201ENST00000603054 253 ntBASIC20.68■□□□□ 0.9
RNF41Q9H4P4 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 AL022326.1-202ENST00000641533 845 ntBASIC20.68■□□□□ 0.9
RNF41Q9H4P4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 LYSMD4-203ENST00000378904 2122 ntBASIC20.68■□□□□ 0.9
RNF41Q9H4P4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF41Q9H4P4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 AC046185.3-201ENST00000623228 1824 ntBASIC20.67■□□□□ 0.9
RNF41Q9H4P4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 AL138688.1-201ENST00000624851 1594 ntBASIC20.67■□□□□ 0.9
RNF41Q9H4P4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF41Q9H4P4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 BX005266.1-201ENST00000473402 457 ntBASIC20.66■□□□□ 0.9
RNF41Q9H4P4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 AL121894.2-201ENST00000602977 491 ntBASIC20.66■□□□□ 0.9
RNF41Q9H4P4 TP73-AS1-207ENST00000624167 988 ntBASIC20.66■□□□□ 0.9
RNF41Q9H4P4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 OR6D1P-202ENST00000641007 5290 ntBASIC20.66■□□□□ 0.9
RNF41Q9H4P4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
RNF41Q9H4P4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
RNF41Q9H4P4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF41Q9H4P4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF41Q9H4P4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF41Q9H4P4 AC148477.5-201ENST00000625164 1645 ntBASIC20.65■□□□□ 0.9
RNF41Q9H4P4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF41Q9H4P4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.65■□□□□ 0.9
RNF41Q9H4P4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF41Q9H4P4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.65■□□□□ 0.9
RNF41Q9H4P4 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF41Q9H4P4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms