Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS35Q96QK1 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 HLA-J-201ENST00000462773 1622 ntBASIC17.43■□□□□ 0.38
VPS35Q96QK1 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 KRT8P10-201ENST00000450021 1447 ntBASIC17.43■□□□□ 0.38
VPS35Q96QK1 AP005117.1-201ENST00000584346 1413 ntBASIC17.43■□□□□ 0.38
VPS35Q96QK1 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.43■□□□□ 0.38
VPS35Q96QK1 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS35Q96QK1 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 AC133963.1-201ENST00000504166 1679 ntBASIC17.42■□□□□ 0.38
VPS35Q96QK1 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 AC134043.2-201ENST00000624206 2238 ntBASIC17.42■□□□□ 0.38
VPS35Q96QK1 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 RN7SL510P-201ENST00000581311 263 ntBASIC17.42■□□□□ 0.38
VPS35Q96QK1 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS35Q96QK1 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS35Q96QK1 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 AC068880.1-201ENST00000507289 2297 ntBASIC17.41■□□□□ 0.38
VPS35Q96QK1 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 AC004870.1-201ENST00000315132 882 ntBASIC17.41■□□□□ 0.38
VPS35Q96QK1 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 FAAHP1-202ENST00000446499 1238 ntBASIC17.41■□□□□ 0.38
VPS35Q96QK1 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 STK25P1-201ENST00000585406 838 ntBASIC17.41■□□□□ 0.38
VPS35Q96QK1 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS35Q96QK1 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS35Q96QK1 AL355877.3-201ENST00000622820 899 ntBASIC17.41■□□□□ 0.38
VPS35Q96QK1 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms