Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 AC116407.2-201ENST00000613639 860 ntBASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 BX276092.7-203ENST00000637198 1536 ntBASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SNRNP40Q96DI7 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 HLA-J-203ENST00000494367 1087 ntBASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 CXCL1P1-201ENST00000502804 216 ntBASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 AC025678.2-201ENST00000562061 970 ntBASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SNRNP40Q96DI7 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SNRNP40Q96DI7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.71■□□□□ 0.1
SNRNP40Q96DI7 AL096828.2-201ENST00000567259 1965 ntBASIC15.71■□□□□ 0.1
SNRNP40Q96DI7 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
SNRNP40Q96DI7 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
SNRNP40Q96DI7 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.71■□□□□ 0.1
SNRNP40Q96DI7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
SNRNP40Q96DI7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 AC239800.4-201ENST00000603712 296 ntBASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SNRNP40Q96DI7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms