Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 LINC01711-201ENST00000598340 967 ntBASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4CQ96CF2 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 AC132008.2-207ENST00000454517 770 ntBASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 AF238378.1-201ENST00000526806 358 ntBASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 AL138688.1-201ENST00000624851 1594 ntBASIC20.93■□□□□ 0.94
CHMP4CQ96CF2 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHMP4CQ96CF2 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 SIRPAP1-201ENST00000448467 1770 ntBASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHMP4CQ96CF2 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms