Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.93■□□□□ 0.78
ERCC4Q92889 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
ERCC4Q92889 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.92■□□□□ 0.78
ERCC4Q92889 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.92■□□□□ 0.78
ERCC4Q92889 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.92■□□□□ 0.78
ERCC4Q92889 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.92■□□□□ 0.78
ERCC4Q92889 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
ERCC4Q92889 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.92■□□□□ 0.78
ERCC4Q92889 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.92■□□□□ 0.78
ERCC4Q92889 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 LYSMD4-203ENST00000378904 2122 ntBASIC19.92■□□□□ 0.78
ERCC4Q92889 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.92■□□□□ 0.78
ERCC4Q92889 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.92■□□□□ 0.78
ERCC4Q92889 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.92■□□□□ 0.78
ERCC4Q92889 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.92■□□□□ 0.78
ERCC4Q92889 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.92■□□□□ 0.78
ERCC4Q92889 AC140113.3-201ENST00000605663 199 ntBASIC19.92■□□□□ 0.78
ERCC4Q92889 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.92■□□□□ 0.78
ERCC4Q92889 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC19.92■□□□□ 0.78
ERCC4Q92889 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.92■□□□□ 0.78
ERCC4Q92889 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ERCC4Q92889 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
ERCC4Q92889 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.91■□□□□ 0.78
ERCC4Q92889 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 AC034232.1-201ENST00000506026 1064 ntBASIC19.91■□□□□ 0.78
ERCC4Q92889 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.91■□□□□ 0.78
ERCC4Q92889 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 AC139887.4-201ENST00000607877 719 ntBASIC19.91■□□□□ 0.78
ERCC4Q92889 LINC01451-201ENST00000623792 534 ntBASIC19.91■□□□□ 0.78
ERCC4Q92889 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.91■□□□□ 0.78
ERCC4Q92889 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
ERCC4Q92889 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
ERCC4Q92889 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
ERCC4Q92889 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ERCC4Q92889 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.91■□□□□ 0.78
ERCC4Q92889 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
ERCC4Q92889 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.9■□□□□ 0.78
ERCC4Q92889 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
ERCC4Q92889 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.9■□□□□ 0.78
ERCC4Q92889 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.9■□□□□ 0.78
ERCC4Q92889 HLA-F-220ENST00000434407 884 ntBASIC19.9■□□□□ 0.78
ERCC4Q92889 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.9■□□□□ 0.78
ERCC4Q92889 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.9■□□□□ 0.78
ERCC4Q92889 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.9■□□□□ 0.78
ERCC4Q92889 AC116407.2-201ENST00000613639 860 ntBASIC19.9■□□□□ 0.78
ERCC4Q92889 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
ERCC4Q92889 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
ERCC4Q92889 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
ERCC4Q92889 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
ERCC4Q92889 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
ERCC4Q92889 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 FER1L4-210ENST00000615531 5998 ntBASIC19.9■□□□□ 0.78
ERCC4Q92889 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms