Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 VN2R19P-201ENST00000442399 1052 ntBASIC17.06■□□□□ 0.32
LMX1AQ8TE12 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 AC104581.1-202ENST00000635932 2618 ntBASIC17.06■□□□□ 0.32
LMX1AQ8TE12 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 FLJ13224-201ENST00000313737 1514 ntBASIC17.06■□□□□ 0.32
LMX1AQ8TE12 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 KRT18P55-202ENST00000578578 1546 ntBASIC17.06■□□□□ 0.32
LMX1AQ8TE12 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1AQ8TE12 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 LINC00982-205ENST00000420957 435 ntBASIC17.05■□□□□ 0.32
LMX1AQ8TE12 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 AC018845.2-201ENST00000568326 409 ntBASIC17.05■□□□□ 0.32
LMX1AQ8TE12 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LMX1AQ8TE12 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 PTCHD3P3-201ENST00000403073 906 ntBASIC17.04■□□□□ 0.32
LMX1AQ8TE12 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 AC004967.1-201ENST00000453589 447 ntBASIC17.04■□□□□ 0.32
LMX1AQ8TE12 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 AC079781.4-201ENST00000641908 219 ntBASIC17.04■□□□□ 0.32
LMX1AQ8TE12 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1AQ8TE12 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.03■□□□□ 0.32
LMX1AQ8TE12 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms