Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SLC17A9-204ENST00000459704 2015 ntTSL 317.98■□□□□ 0.477e-7■□□□□ 9.1
DDX55Q8NHQ9 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.457e-7■□□□□ 9.1
DDX55Q8NHQ9 GGT7-203ENST00000469018 1064 ntTSL 517.53■□□□□ 0.47e-7■□□□□ 9.1
DDX55Q8NHQ9 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.361e-23■□□□□ 9.1
DDX55Q8NHQ9 FLNA-210ENST00000462590 1026 ntTSL 1 (best)17.21■□□□□ 0.355e-8■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-209ENST00000435947 696 ntTSL 217.16■□□□□ 0.347e-7■□□□□ 9.1
DDX55Q8NHQ9 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.07■□□□□ 0.325e-16■□□□□ 9.1
DDX55Q8NHQ9 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.287e-7■□□□□ 9.1
DDX55Q8NHQ9 SLC17A9-205ENST00000483113 1624 ntTSL 316.78■□□□□ 0.287e-7■□□□□ 9.1
DDX55Q8NHQ9 NRBP1-206ENST00000460499 2561 ntTSL 216.73■□□□□ 0.275e-16■□□□□ 9.1
DDX55Q8NHQ9 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.275e-16■□□□□ 9.1
DDX55Q8NHQ9 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.277e-7■□□□□ 9.1
DDX55Q8NHQ9 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.191e-23■□□□□ 9.1
DDX55Q8NHQ9 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.117e-7■□□□□ 9.1
DDX55Q8NHQ9 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.117e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC15.34■□□□□ 0.057e-7■□□□□ 9.1
DDX55Q8NHQ9 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.047e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-210ENST00000453754 401 ntTSL 315.14■□□□□ 0.017e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-206ENST00000428833 641 ntTSL 215.1■□□□□ 0.017e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-207ENST00000431043 998 ntTSL 215.02■□□□□ -07e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC15.02■□□□□ -07e-7■□□□□ 9.1
DDX55Q8NHQ9 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.062e-8■□□□□ 9.1
DDX55Q8NHQ9 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.085e-16■□□□□ 9.1
DDX55Q8NHQ9 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.087e-7■□□□□ 9.1
DDX55Q8NHQ9 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.111e-23■□□□□ 9.1
DDX55Q8NHQ9 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.27e-7■□□□□ 9.1
DDX55Q8NHQ9 SLC17A9-202ENST00000370351 3580 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.237e-7■□□□□ 9.1
DDX55Q8NHQ9 SLC17A9-207ENST00000488738 3992 ntTSL 213.24□□□□□ -0.297e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-212ENST00000589187 568 ntTSL 4 BASIC13.17□□□□□ -0.37e-7■□□□□ 9.1
DDX55Q8NHQ9 ELOB-203ENST00000409906 991 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.321e-18■□□□□ 9.1
DDX55Q8NHQ9 ELOB-205ENST00000572954 331 ntTSL 2 BASIC13.01□□□□□ -0.331e-18■□□□□ 9.1
DDX55Q8NHQ9 TJP2-201ENST00000348208 4058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.347e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-202ENST00000414002 430 ntTSL 212.17□□□□□ -0.467e-7■□□□□ 9.1
DDX55Q8NHQ9 ELOB-201ENST00000262306 582 ntTSL 2 BASIC11.75□□□□□ -0.531e-18■□□□□ 9.1
DDX55Q8NHQ9 ELOB-204ENST00000494946 472 ntTSL 210.82□□□□□ -0.681e-18■□□□□ 9.1
DDX55Q8NHQ9 POM121-204ENST00000446813 3456 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.737e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-220ENST00000624128 672 ntTSL 210.38□□□□□ -0.757e-7■□□□□ 9.1
DDX55Q8NHQ9 ELAVL1-204ENST00000596154 880 ntTSL 310.07□□□□□ -0.87e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-218ENST00000623901 711 ntTSL 5 BASIC9.78□□□□□ -0.847e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-217ENST00000623650 886 ntTSL 59.39□□□□□ -0.917e-7■□□□□ 9.1
DDX55Q8NHQ9 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.087e-7■□□□□ 9.1
DDX55Q8NHQ9 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC8.2□□□□□ -1.11e-23■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC7.57□□□□□ -1.27e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-204ENST00000425170 489 ntTSL 27.01□□□□□ -1.297e-7■□□□□ 9.1
DDX55Q8NHQ9 AP3S1-202ENST00000395548 1180 ntTSL 1 (best)6.94□□□□□ -1.37e-7■□□□□ 9.1
DDX55Q8NHQ9 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC6.72□□□□□ -1.335e-16■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC6.59□□□□□ -1.357e-7■□□□□ 9.1
DDX55Q8NHQ9 U2SURP-205ENST00000467348 1267 ntTSL 56.48□□□□□ -1.377e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.27□□□□□ -1.417e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-216ENST00000623267 374 ntTSL 56.27□□□□□ -1.417e-7■□□□□ 9.1
DDX55Q8NHQ9 C16orf72-202ENST00000574285 10359 ntTSL 26.25□□□□□ -1.417e-7■□□□□ 9.1
DDX55Q8NHQ9 PEG10-201ENST00000465184 788 ntTSL 35.79□□□□□ -1.485e-16■□□□□ 9.1
DDX55Q8NHQ9 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.75□□□□□ -1.495e-16■□□□□ 9.1
DDX55Q8NHQ9 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.67□□□□□ -1.57e-7■□□□□ 9.1
DDX55Q8NHQ9 ACSL4-209ENST00000505075 390 ntTSL 35.51□□□□□ -1.531e-23■□□□□ 9.1
DDX55Q8NHQ9 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.51□□□□□ -1.535e-16■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-205ENST00000427501 680 ntTSL 25.19□□□□□ -1.587e-7■□□□□ 9.1
DDX55Q8NHQ9 SKP1-212ENST00000523966 899 ntTSL 35□□□□□ -1.615e-16■□□□□ 9.1
DDX55Q8NHQ9 AC087190.4-201ENST00000574616 8334 ntBASIC4.93□□□□□ -1.627e-7■□□□□ 9.1
DDX55Q8NHQ9 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.637e-7■□□□□ 9.1
DDX55Q8NHQ9 AP3S1-203ENST00000505423 611 ntTSL 24.47□□□□□ -1.697e-7■□□□□ 9.1
DDX55Q8NHQ9 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.75e-16■□□□□ 9.1
DDX55Q8NHQ9 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.98□□□□□ -1.775e-16■□□□□ 9.1
DDX55Q8NHQ9 SKP1-204ENST00000517691 2033 ntTSL 1 (best)3.21□□□□□ -1.95e-16■□□□□ 9.1
DDX55Q8NHQ9 U2SURP-203ENST00000463563 4364 ntTSL 22.78□□□□□ -1.967e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-208ENST00000433843 388 ntTSL 22.55□□□□□ -27e-7■□□□□ 9.1
DDX55Q8NHQ9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.871e-6■□□□□ 9.1
DDX55Q8NHQ9 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.26■□□□□ 0.191e-6■□□□□ 9.1
DDX55Q8NHQ9 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.031e-6■□□□□ 9.1
DDX55Q8NHQ9 AMBP-203ENST00000540645 1356 ntTSL 215.11■□□□□ 0.011e-323■□□□□ 9.1
DDX55Q8NHQ9 KRT8-210ENST00000548998 918 ntTSL 521.9■■□□□ 1.11e-6■□□□□ 9.1
DDX55Q8NHQ9 KRT8-204ENST00000546826 1165 ntTSL 520.88■□□□□ 0.931e-6■□□□□ 9.1
DDX55Q8NHQ9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC24.43■■□□□ 1.52e-13■□□□□ 9.1
DDX55Q8NHQ9 AC079466.1-201ENST00000587961 4453 ntTSL 2 BASIC9.74□□□□□ -0.854e-35■□□□□ 9.1
DDX55Q8NHQ9 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC16.24■□□□□ 0.191e-30■□□□□ 9.1
DDX55Q8NHQ9 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.628e-7■□□□□ 9.1
DDX55Q8NHQ9 SLC7A8-204ENST00000422941 3018 ntTSL 2 BASIC11.81□□□□□ -0.529e-8■□□□□ 9.1
DDX55Q8NHQ9 SLC7A8-201ENST00000316902 4216 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.599e-8■□□□□ 9.1
DDX55Q8NHQ9 SLC7A8-203ENST00000397310 2719 ntTSL 210.84□□□□□ -0.679e-8■□□□□ 9.1
DDX55Q8NHQ9 SLC7A8-206ENST00000469263 3557 ntTSL 1 (best) BASIC9.56□□□□□ -0.889e-8■□□□□ 9.1
DDX55Q8NHQ9 SLC7A8-202ENST00000339733 3066 ntTSL 1 (best)8.86□□□□□ -0.999e-8■□□□□ 9.1
DDX55Q8NHQ9 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.135e-30■□□□□ 9.1
DDX55Q8NHQ9 PRKAB1-206ENST00000541640 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.155e-30■□□□□ 9.1
DDX55Q8NHQ9 PRKAB1-202ENST00000537057 1510 nt13.73□□□□□ -0.215e-30■□□□□ 9.1
DDX55Q8NHQ9 PRKAB1-207ENST00000542698 4019 ntTSL 1 (best)8.76□□□□□ -1.015e-30■□□□□ 9.1
DDX55Q8NHQ9 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.151e-9■□□□□ 9.1
DDX55Q8NHQ9 BLOC1S5-TXNDC5-201ENST00000439343 3030 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.181e-9■□□□□ 9.1
DDX55Q8NHQ9 TXNDC5-202ENST00000460138 2704 ntTSL 210.86□□□□□ -0.671e-9■□□□□ 9.1
DDX55Q8NHQ9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC22.91■■□□□ 1.261e-7■□□□□ 9.1
DDX55Q8NHQ9 NAP1L4-209ENST00000492594 570 ntTSL 321.95■■□□□ 1.11e-7■□□□□ 9.1
DDX55Q8NHQ9 NAP1L4-206ENST00000469089 707 ntTSL 317.22■□□□□ 0.351e-7■□□□□ 9.1
DDX55Q8NHQ9 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC19.54■□□□□ 0.725e-17■□□□□ 9.1
DDX55Q8NHQ9 ARHGDIA-209ENST00000582309 628 ntTSL 220.87■□□□□ 0.934e-9■□□□□ 9.1
DDX55Q8NHQ9 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.227e-27■□□□□ 9.1
DDX55Q8NHQ9 C3-212ENST00000599899 1992 ntTSL 29.22□□□□□ -0.937e-27■□□□□ 9.1
DDX55Q8NHQ9 C3-215ENST00000601008 303 ntTSL 58.28□□□□□ -1.087e-27■□□□□ 9.1
DDX55Q8NHQ9 PON2-204ENST00000455123 1515 ntTSL 1 (best)27.06■■□□□ 1.925e-7■□□□□ 9.1
DDX55Q8NHQ9 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.785e-7■□□□□ 9.1
DDX55Q8NHQ9 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC25.94■■□□□ 1.745e-7■□□□□ 9.1
DDX55Q8NHQ9 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC25.64■■□□□ 1.695e-7■□□□□ 9.1
Retrieved 100 of 15,504 protein–RNA pairs in 70.3 ms