Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 ZNRF2P3-201ENST00000424200 374 ntBASIC14□□□□□ -0.17
CLRN3Q8NCR9 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CLRN3Q8NCR9 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CLRN3Q8NCR9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 AC104187.1-201ENST00000607510 612 ntBASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 MIR6084-201ENST00000622012 110 ntBASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 AC073347.1-201ENST00000421633 2643 ntBASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 LINC00304-203ENST00000565008 1864 ntBASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLRN3Q8NCR9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 AC139749.1-202ENST00000617529 3139 ntBASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 HLA-J-201ENST00000462773 1622 ntBASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLRN3Q8NCR9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms