Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT40Q6A162 AC106820.2-201ENST00000563775 3264 ntBASIC20.33■□□□□ 0.85
KRT40Q6A162 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
KRT40Q6A162 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT40Q6A162 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT40Q6A162 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT40Q6A162 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT40Q6A162 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT40Q6A162 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.33■□□□□ 0.85
KRT40Q6A162 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT40Q6A162 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT40Q6A162 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
KRT40Q6A162 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
KRT40Q6A162 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.33■□□□□ 0.85
KRT40Q6A162 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.33■□□□□ 0.85
KRT40Q6A162 AP002469.2-201ENST00000531724 424 ntBASIC20.33■□□□□ 0.85
KRT40Q6A162 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT40Q6A162 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
KRT40Q6A162 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
KRT40Q6A162 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.33■□□□□ 0.85
KRT40Q6A162 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
KRT40Q6A162 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.33■□□□□ 0.85
KRT40Q6A162 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
KRT40Q6A162 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
KRT40Q6A162 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
KRT40Q6A162 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.33■□□□□ 0.84
KRT40Q6A162 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
KRT40Q6A162 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
KRT40Q6A162 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.33■□□□□ 0.84
KRT40Q6A162 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
KRT40Q6A162 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.32■□□□□ 0.84
KRT40Q6A162 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.32■□□□□ 0.84
KRT40Q6A162 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
KRT40Q6A162 DRAXINP1-201ENST00000437611 948 ntBASIC20.32■□□□□ 0.84
KRT40Q6A162 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.32■□□□□ 0.84
KRT40Q6A162 FOSL1P1-201ENST00000511041 816 ntBASIC20.32■□□□□ 0.84
KRT40Q6A162 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.32■□□□□ 0.84
KRT40Q6A162 AC091304.2-201ENST00000564639 760 ntBASIC20.32■□□□□ 0.84
KRT40Q6A162 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.32■□□□□ 0.84
KRT40Q6A162 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
KRT40Q6A162 AC019129.2-201ENST00000609837 1235 ntBASIC20.32■□□□□ 0.84
KRT40Q6A162 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.32■□□□□ 0.84
KRT40Q6A162 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC20.32■□□□□ 0.84
KRT40Q6A162 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.32■□□□□ 0.84
KRT40Q6A162 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.32■□□□□ 0.84
KRT40Q6A162 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.32■□□□□ 0.84
KRT40Q6A162 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.32■□□□□ 0.84
KRT40Q6A162 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 AC233702.3-201ENST00000578656 1387 ntBASIC20.32■□□□□ 0.84
KRT40Q6A162 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
KRT40Q6A162 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
KRT40Q6A162 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.32■□□□□ 0.84
KRT40Q6A162 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
KRT40Q6A162 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
KRT40Q6A162 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
KRT40Q6A162 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.31■□□□□ 0.84
KRT40Q6A162 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.31■□□□□ 0.84
KRT40Q6A162 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.31■□□□□ 0.84
KRT40Q6A162 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 AC002558.1-201ENST00000488906 803 ntBASIC20.31■□□□□ 0.84
KRT40Q6A162 AP000867.3-201ENST00000524675 377 ntBASIC20.31■□□□□ 0.84
KRT40Q6A162 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.31■□□□□ 0.84
KRT40Q6A162 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.31■□□□□ 0.84
KRT40Q6A162 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.31■□□□□ 0.84
KRT40Q6A162 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
KRT40Q6A162 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.31■□□□□ 0.84
KRT40Q6A162 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
KRT40Q6A162 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.31■□□□□ 0.84
KRT40Q6A162 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.31■□□□□ 0.84
KRT40Q6A162 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
KRT40Q6A162 AC138932.1-201ENST00000534164 6830 ntBASIC20.3■□□□□ 0.84
KRT40Q6A162 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
KRT40Q6A162 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.3■□□□□ 0.84
KRT40Q6A162 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
KRT40Q6A162 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
KRT40Q6A162 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
KRT40Q6A162 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
KRT40Q6A162 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.3■□□□□ 0.84
KRT40Q6A162 TOB2P1-201ENST00000469761 992 ntBASIC20.3■□□□□ 0.84
KRT40Q6A162 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.3■□□□□ 0.84
KRT40Q6A162 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.3■□□□□ 0.84
KRT40Q6A162 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.3■□□□□ 0.84
KRT40Q6A162 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms