Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
PEX3P56589 AL356309.3-201ENST00000624132 1934 ntBASIC19.33■□□□□ 0.69
PEX3P56589 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
PEX3P56589 AC079776.2-201ENST00000641154 1609 ntBASIC19.33■□□□□ 0.69
PEX3P56589 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
PEX3P56589 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.33■□□□□ 0.69
PEX3P56589 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PEX3P56589 AC004817.3-201ENST00000602957 2129 ntBASIC19.33■□□□□ 0.69
PEX3P56589 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PEX3P56589 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PEX3P56589 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PEX3P56589 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.33■□□□□ 0.69
PEX3P56589 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.33■□□□□ 0.69
PEX3P56589 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.33■□□□□ 0.68
PEX3P56589 MYCLP1-201ENST00000372451 1075 ntBASIC19.33■□□□□ 0.68
PEX3P56589 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
PEX3P56589 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.33■□□□□ 0.68
PEX3P56589 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PEX3P56589 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PEX3P56589 SART3-203ENST00000546611 1184 ntBASIC19.33■□□□□ 0.68
PEX3P56589 NKAPP1-205ENST00000585790 367 ntBASIC19.33■□□□□ 0.68
PEX3P56589 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.33■□□□□ 0.68
PEX3P56589 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
PEX3P56589 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PEX3P56589 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.33■□□□□ 0.68
PEX3P56589 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
PEX3P56589 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.33■□□□□ 0.68
PEX3P56589 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PEX3P56589 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.33■□□□□ 0.68
PEX3P56589 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PEX3P56589 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PEX3P56589 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
PEX3P56589 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.33■□□□□ 0.68
PEX3P56589 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.33■□□□□ 0.68
PEX3P56589 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PEX3P56589 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.32■□□□□ 0.68
PEX3P56589 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
PEX3P56589 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 AC003669.1-201ENST00000334569 611 ntBASIC19.32■□□□□ 0.68
PEX3P56589 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
PEX3P56589 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.32■□□□□ 0.68
PEX3P56589 SPDYE21P-201ENST00000413323 827 ntBASIC19.32■□□□□ 0.68
PEX3P56589 STK19B-204ENST00000512515 211 ntBASIC19.32■□□□□ 0.68
PEX3P56589 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.32■□□□□ 0.68
PEX3P56589 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.32■□□□□ 0.68
PEX3P56589 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.32■□□□□ 0.68
PEX3P56589 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
PEX3P56589 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.32■□□□□ 0.68
PEX3P56589 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
PEX3P56589 AC148477.5-201ENST00000625164 1645 ntBASIC19.32■□□□□ 0.68
PEX3P56589 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PEX3P56589 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
PEX3P56589 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.31■□□□□ 0.68
PEX3P56589 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
PEX3P56589 FZD10-202ENST00000539839 3282 ntBASIC19.31■□□□□ 0.68
PEX3P56589 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.31■□□□□ 0.68
PEX3P56589 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.31■□□□□ 0.68
PEX3P56589 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.31■□□□□ 0.68
PEX3P56589 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 BX005266.1-201ENST00000473402 457 ntBASIC19.31■□□□□ 0.68
PEX3P56589 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
PEX3P56589 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.31■□□□□ 0.68
PEX3P56589 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.31■□□□□ 0.68
PEX3P56589 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
PEX3P56589 AL160237.2-201ENST00000556165 472 ntBASIC19.31■□□□□ 0.68
PEX3P56589 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.31■□□□□ 0.68
PEX3P56589 AL139327.4-201ENST00000612362 153 ntBASIC19.31■□□□□ 0.68
PEX3P56589 AL139288.1-201ENST00000623748 933 ntBASIC19.31■□□□□ 0.68
PEX3P56589 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.31■□□□□ 0.68
PEX3P56589 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.31■□□□□ 0.68
PEX3P56589 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PEX3P56589 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
PEX3P56589 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms