Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.35■□□□□ 0.53
HDAC4P56524 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.35■□□□□ 0.53
HDAC4P56524 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.35■□□□□ 0.53
HDAC4P56524 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
HDAC4P56524 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
HDAC4P56524 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.35■□□□□ 0.53
HDAC4P56524 AC141586.5-201ENST00000624546 2050 ntBASIC18.35■□□□□ 0.53
HDAC4P56524 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HDAC4P56524 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
HDAC4P56524 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.34■□□□□ 0.53
HDAC4P56524 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HDAC4P56524 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
HDAC4P56524 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 INTS4P1-201ENST00000438455 1935 ntBASIC18.34■□□□□ 0.53
HDAC4P56524 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 RCN1P2-201ENST00000398357 915 ntBASIC18.34■□□□□ 0.53
HDAC4P56524 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.34■□□□□ 0.53
HDAC4P56524 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.34■□□□□ 0.53
HDAC4P56524 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HDAC4P56524 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.34■□□□□ 0.53
HDAC4P56524 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HDAC4P56524 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.34■□□□□ 0.53
HDAC4P56524 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.34■□□□□ 0.53
HDAC4P56524 LYSMD4-203ENST00000378904 2122 ntBASIC18.34■□□□□ 0.53
HDAC4P56524 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HDAC4P56524 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
HDAC4P56524 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDAC4P56524 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDAC4P56524 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.33■□□□□ 0.53
HDAC4P56524 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
HDAC4P56524 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.33■□□□□ 0.53
HDAC4P56524 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
HDAC4P56524 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
HDAC4P56524 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.33■□□□□ 0.52
HDAC4P56524 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 HCG4P8-203ENST00000443049 980 ntBASIC18.33■□□□□ 0.52
HDAC4P56524 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.33■□□□□ 0.52
HDAC4P56524 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.33■□□□□ 0.52
HDAC4P56524 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 AC109462.3-201ENST00000573934 613 ntBASIC18.33■□□□□ 0.52
HDAC4P56524 AC099336.1-202ENST00000602961 463 ntBASIC18.33■□□□□ 0.52
HDAC4P56524 AC114341.1-201ENST00000618070 349 ntBASIC18.33■□□□□ 0.52
HDAC4P56524 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HDAC4P56524 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
HDAC4P56524 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
HDAC4P56524 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 OR6D1P-202ENST00000641007 5290 ntBASIC18.33■□□□□ 0.52
HDAC4P56524 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HDAC4P56524 AC106820.2-201ENST00000563775 3264 ntBASIC18.33■□□□□ 0.52
HDAC4P56524 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC4P56524 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.32■□□□□ 0.52
HDAC4P56524 AL645608.8-201ENST00000606034 2086 ntBASIC18.32■□□□□ 0.52
HDAC4P56524 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HDAC4P56524 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.32■□□□□ 0.52
HDAC4P56524 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC4P56524 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.32■□□□□ 0.52
HDAC4P56524 AC011270.2-201ENST00000624293 2550 ntBASIC18.32■□□□□ 0.52
HDAC4P56524 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC4P56524 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
HDAC4P56524 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HDAC4P56524 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.32■□□□□ 0.52
HDAC4P56524 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.32■□□□□ 0.52
HDAC4P56524 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.32■□□□□ 0.52
HDAC4P56524 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC4P56524 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.32■□□□□ 0.52
HDAC4P56524 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
HDAC4P56524 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.32■□□□□ 0.52
HDAC4P56524 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
HDAC4P56524 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC4P56524 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC4P56524 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC4P56524 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC4P56524 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HDAC4P56524 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.32■□□□□ 0.52
HDAC4P56524 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HDAC4P56524 KRT8P10-201ENST00000450021 1447 ntBASIC18.32■□□□□ 0.52
HDAC4P56524 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HDAC4P56524 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms