Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC100803.2-201ENST00000562459 1963 ntBASIC24.09■■□□□ 1.45
MSH6P52701 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
MSH6P52701 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
MSH6P52701 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
MSH6P52701 AC129492.6-201ENST00000611383 1305 ntBASIC24.09■■□□□ 1.45
MSH6P52701 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
MSH6P52701 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC24.09■■□□□ 1.45
MSH6P52701 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
MSH6P52701 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC24.09■■□□□ 1.45
MSH6P52701 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
MSH6P52701 AC092580.3-201ENST00000430932 139 ntBASIC24.09■■□□□ 1.45
MSH6P52701 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC24.09■■□□□ 1.45
MSH6P52701 SLC25A6P2-201ENST00000497974 877 ntBASIC24.09■■□□□ 1.45
MSH6P52701 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC24.09■■□□□ 1.45
MSH6P52701 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC24.09■■□□□ 1.45
MSH6P52701 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC24.09■■□□□ 1.45
MSH6P52701 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC24.09■■□□□ 1.45
MSH6P52701 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
MSH6P52701 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
MSH6P52701 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
MSH6P52701 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
MSH6P52701 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
MSH6P52701 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC24.08■■□□□ 1.45
MSH6P52701 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC24.08■■□□□ 1.45
MSH6P52701 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
MSH6P52701 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
MSH6P52701 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
MSH6P52701 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC24.08■■□□□ 1.45
MSH6P52701 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC24.08■■□□□ 1.45
MSH6P52701 PPP6R2P1-201ENST00000450880 1275 ntBASIC24.08■■□□□ 1.45
MSH6P52701 AC009118.2-201ENST00000613275 655 ntBASIC24.08■■□□□ 1.45
MSH6P52701 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
MSH6P52701 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
MSH6P52701 BX276092.7-203ENST00000637198 1536 ntBASIC24.08■■□□□ 1.45
MSH6P52701 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC24.08■■□□□ 1.45
MSH6P52701 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
MSH6P52701 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC24.08■■□□□ 1.45
MSH6P52701 PHGDH-209ENST00000641074 1780 ntBASIC24.08■■□□□ 1.45
MSH6P52701 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
MSH6P52701 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
MSH6P52701 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
MSH6P52701 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
MSH6P52701 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH6P52701 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC24.07■■□□□ 1.44
MSH6P52701 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH6P52701 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
MSH6P52701 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
MSH6P52701 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
MSH6P52701 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC24.07■■□□□ 1.44
MSH6P52701 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH6P52701 AC004890.2-204ENST00000481968 304 ntBASIC24.07■■□□□ 1.44
MSH6P52701 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
MSH6P52701 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC24.07■■□□□ 1.44
MSH6P52701 MIR6080-201ENST00000617359 66 ntBASIC24.07■■□□□ 1.44
MSH6P52701 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
MSH6P52701 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
MSH6P52701 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
MSH6P52701 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH6P52701 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
MSH6P52701 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC24.06■■□□□ 1.44
MSH6P52701 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC24.06■■□□□ 1.44
MSH6P52701 ANO7L1-203ENST00000602586 1720 ntBASIC24.06■■□□□ 1.44
MSH6P52701 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
MSH6P52701 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
MSH6P52701 MRPS18AP1-201ENST00000414458 589 ntBASIC24.06■■□□□ 1.44
MSH6P52701 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC24.06■■□□□ 1.44
MSH6P52701 KRT17P7-201ENST00000451704 1104 ntBASIC24.06■■□□□ 1.44
MSH6P52701 AC087163.2-201ENST00000457299 853 ntBASIC24.06■■□□□ 1.44
MSH6P52701 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC24.06■■□□□ 1.44
MSH6P52701 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC24.06■■□□□ 1.44
MSH6P52701 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC24.06■■□□□ 1.44
MSH6P52701 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC24.06■■□□□ 1.44
MSH6P52701 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
MSH6P52701 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
MSH6P52701 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
MSH6P52701 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
MSH6P52701 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC24.06■■□□□ 1.44
MSH6P52701 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
MSH6P52701 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC24.05■■□□□ 1.44
MSH6P52701 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC24.05■■□□□ 1.44
MSH6P52701 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC24.05■■□□□ 1.44
MSH6P52701 IGHV3-62-201ENST00000520057 340 ntBASIC24.05■■□□□ 1.44
MSH6P52701 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC24.05■■□□□ 1.44
MSH6P52701 KRT8P23-201ENST00000560090 1207 ntBASIC24.05■■□□□ 1.44
MSH6P52701 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC24.05■■□□□ 1.44
MSH6P52701 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
MSH6P52701 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms