Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.25■□□□□ 0.67
CLCN3P51790 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CLCN3P51790 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.25■□□□□ 0.67
CLCN3P51790 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CLCN3P51790 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLCN3P51790 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.25■□□□□ 0.67
CLCN3P51790 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.24■□□□□ 0.67
CLCN3P51790 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
CLCN3P51790 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 LINC00982-205ENST00000420957 435 ntBASIC19.24■□□□□ 0.67
CLCN3P51790 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.24■□□□□ 0.67
CLCN3P51790 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.24■□□□□ 0.67
CLCN3P51790 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.24■□□□□ 0.67
CLCN3P51790 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.24■□□□□ 0.67
CLCN3P51790 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.24■□□□□ 0.67
CLCN3P51790 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CLCN3P51790 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLCN3P51790 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CLCN3P51790 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.23■□□□□ 0.67
CLCN3P51790 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.23■□□□□ 0.67
CLCN3P51790 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.23■□□□□ 0.67
CLCN3P51790 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.23■□□□□ 0.67
CLCN3P51790 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.23■□□□□ 0.67
CLCN3P51790 BX842568.4-201ENST00000421222 227 ntBASIC19.23■□□□□ 0.67
CLCN3P51790 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.23■□□□□ 0.67
CLCN3P51790 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.23■□□□□ 0.67
CLCN3P51790 AC108073.2-201ENST00000464002 357 ntBASIC19.23■□□□□ 0.67
CLCN3P51790 RPS15P9-201ENST00000494093 319 ntBASIC19.23■□□□□ 0.67
CLCN3P51790 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.23■□□□□ 0.67
CLCN3P51790 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.23■□□□□ 0.67
CLCN3P51790 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CLCN3P51790 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.23■□□□□ 0.67
CLCN3P51790 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLCN3P51790 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CLCN3P51790 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CLCN3P51790 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCN3P51790 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.22■□□□□ 0.67
CLCN3P51790 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.22■□□□□ 0.67
CLCN3P51790 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.22■□□□□ 0.67
CLCN3P51790 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCN3P51790 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCN3P51790 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLCN3P51790 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCN3P51790 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CLCN3P51790 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCN3P51790 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCN3P51790 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.22■□□□□ 0.67
CLCN3P51790 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.22■□□□□ 0.67
CLCN3P51790 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.22■□□□□ 0.67
CLCN3P51790 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.22■□□□□ 0.67
CLCN3P51790 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.22■□□□□ 0.67
CLCN3P51790 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.22■□□□□ 0.67
CLCN3P51790 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.22■□□□□ 0.67
CLCN3P51790 AL353135.1-201ENST00000606729 504 ntBASIC19.22■□□□□ 0.67
CLCN3P51790 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLCN3P51790 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.22■□□□□ 0.67
CLCN3P51790 AC006116.8-202ENST00000587620 1550 ntBASIC19.22■□□□□ 0.67
CLCN3P51790 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.22■□□□□ 0.67
CLCN3P51790 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLCN3P51790 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.22■□□□□ 0.67
CLCN3P51790 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.22■□□□□ 0.67
CLCN3P51790 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.22■□□□□ 0.67
CLCN3P51790 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CLCN3P51790 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.21■□□□□ 0.67
CLCN3P51790 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms