Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.52■□□□□ 0.72
HTTP42858 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC19.52■□□□□ 0.72
HTTP42858 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC19.52■□□□□ 0.72
HTTP42858 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.52■□□□□ 0.72
HTTP42858 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
HTTP42858 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
HTTP42858 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
HTTP42858 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC19.52■□□□□ 0.72
HTTP42858 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC19.52■□□□□ 0.72
HTTP42858 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
HTTP42858 AC084346.2-201ENST00000607097 949 ntBASIC19.52■□□□□ 0.72
HTTP42858 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.52■□□□□ 0.72
HTTP42858 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HTTP42858 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HTTP42858 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.52■□□□□ 0.71
HTTP42858 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
HTTP42858 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.52■□□□□ 0.71
HTTP42858 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HTTP42858 AC100757.3-201ENST00000622361 1406 ntBASIC19.52■□□□□ 0.71
HTTP42858 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
HTTP42858 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.51■□□□□ 0.71
HTTP42858 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC19.51■□□□□ 0.71
HTTP42858 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.51■□□□□ 0.71
HTTP42858 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 AC009118.2-201ENST00000613275 655 ntBASIC19.51■□□□□ 0.71
HTTP42858 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.51■□□□□ 0.71
HTTP42858 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.51■□□□□ 0.71
HTTP42858 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC19.51■□□□□ 0.71
HTTP42858 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC19.51■□□□□ 0.71
HTTP42858 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HTTP42858 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HTTP42858 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.51■□□□□ 0.71
HTTP42858 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC19.51■□□□□ 0.71
HTTP42858 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HTTP42858 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HTTP42858 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HTTP42858 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HTTP42858 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HTTP42858 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
HTTP42858 MIR4525-201ENST00000580000 75 ntBASIC19.5■□□□□ 0.71
HTTP42858 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HTTP42858 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
HTTP42858 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HTTP42858 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HTTP42858 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.5■□□□□ 0.71
HTTP42858 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC19.5■□□□□ 0.71
HTTP42858 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC19.5■□□□□ 0.71
HTTP42858 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC19.5■□□□□ 0.71
HTTP42858 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
HTTP42858 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HTTP42858 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
HTTP42858 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC19.49■□□□□ 0.71
HTTP42858 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.49■□□□□ 0.71
HTTP42858 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
HTTP42858 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.49■□□□□ 0.71
HTTP42858 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 GIMAP3P-201ENST00000495150 836 ntBASIC19.49■□□□□ 0.71
HTTP42858 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
HTTP42858 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.49■□□□□ 0.71
HTTP42858 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
HTTP42858 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HTTP42858 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
HTTP42858 AL671277.1-201ENST00000429656 993 ntBASIC19.49■□□□□ 0.71
HTTP42858 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC19.49■□□□□ 0.71
HTTP42858 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC19.49■□□□□ 0.71
HTTP42858 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HTTP42858 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
HTTP42858 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HTTP42858 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.48■□□□□ 0.71
HTTP42858 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms