Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN4AP35499 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN4AP35499 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC20.52■□□□□ 0.88
SCN4AP35499 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN4AP35499 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN4AP35499 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SCN4AP35499 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN4AP35499 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SCN4AP35499 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
SCN4AP35499 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 AC140912.1-201ENST00000577171 1054 ntBASIC20.51■□□□□ 0.87
SCN4AP35499 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SCN4AP35499 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN4AP35499 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN4AP35499 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.5■□□□□ 0.87
SCN4AP35499 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.5■□□□□ 0.87
SCN4AP35499 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN4AP35499 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.5■□□□□ 0.87
SCN4AP35499 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.5■□□□□ 0.87
SCN4AP35499 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN4AP35499 AC027369.6-201ENST00000525520 931 ntBASIC20.5■□□□□ 0.87
SCN4AP35499 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SCN4AP35499 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.5■□□□□ 0.87
SCN4AP35499 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
SCN4AP35499 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SCN4AP35499 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.5■□□□□ 0.87
SCN4AP35499 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.5■□□□□ 0.87
SCN4AP35499 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN4AP35499 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.5■□□□□ 0.87
SCN4AP35499 RPS2P32-201ENST00000439199 892 ntBASIC20.5■□□□□ 0.87
SCN4AP35499 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SCN4AP35499 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN4AP35499 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.5■□□□□ 0.87
SCN4AP35499 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN4AP35499 MIR4453-201ENST00000584019 89 ntBASIC20.5■□□□□ 0.87
SCN4AP35499 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC20.5■□□□□ 0.87
SCN4AP35499 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN4AP35499 AC008267.7-201ENST00000624570 1194 ntBASIC20.5■□□□□ 0.87
SCN4AP35499 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN4AP35499 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 HMGA1P7-201ENST00000406908 502 ntBASIC20.49■□□□□ 0.87
SCN4AP35499 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SCN4AP35499 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.49■□□□□ 0.87
SCN4AP35499 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.49■□□□□ 0.87
SCN4AP35499 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC20.49■□□□□ 0.87
SCN4AP35499 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.49■□□□□ 0.87
SCN4AP35499 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.49■□□□□ 0.87
SCN4AP35499 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.49■□□□□ 0.87
SCN4AP35499 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN4AP35499 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SCN4AP35499 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.48■□□□□ 0.87
SCN4AP35499 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.48■□□□□ 0.87
SCN4AP35499 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.48■□□□□ 0.87
SCN4AP35499 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.48■□□□□ 0.87
SCN4AP35499 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.48■□□□□ 0.87
SCN4AP35499 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
SCN4AP35499 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.48■□□□□ 0.87
SCN4AP35499 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.48■□□□□ 0.87
SCN4AP35499 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.48■□□□□ 0.87
SCN4AP35499 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
SCN4AP35499 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SCN4AP35499 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms