Protein–RNA interactions for Protein: P20807

CAPN3, Calpain-3, humanhuman

Predictions only

Length 821 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3P20807 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.93■□□□□ 0.3
CAPN3P20807 AC093458.2-201ENST00000623150 629 ntBASIC16.93■□□□□ 0.3
CAPN3P20807 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CAPN3P20807 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 LYSMD4-203ENST00000378904 2122 ntBASIC16.93■□□□□ 0.3
CAPN3P20807 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
CAPN3P20807 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.93■□□□□ 0.3
CAPN3P20807 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CAPN3P20807 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.92■□□□□ 0.3
CAPN3P20807 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CAPN3P20807 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CAPN3P20807 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.92■□□□□ 0.3
CAPN3P20807 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.92■□□□□ 0.3
CAPN3P20807 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CAPN3P20807 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
CAPN3P20807 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.92■□□□□ 0.3
CAPN3P20807 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.92■□□□□ 0.3
CAPN3P20807 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.92■□□□□ 0.3
CAPN3P20807 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.92■□□□□ 0.3
CAPN3P20807 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.92■□□□□ 0.3
CAPN3P20807 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.92■□□□□ 0.3
CAPN3P20807 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.92■□□□□ 0.3
CAPN3P20807 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CAPN3P20807 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.92■□□□□ 0.3
CAPN3P20807 AC105020.1-201ENST00000435356 2205 ntBASIC16.92■□□□□ 0.3
CAPN3P20807 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CAPN3P20807 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CAPN3P20807 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.91■□□□□ 0.3
CAPN3P20807 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CAPN3P20807 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.91■□□□□ 0.3
CAPN3P20807 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CAPN3P20807 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CAPN3P20807 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.91■□□□□ 0.3
CAPN3P20807 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 KRT18P65-201ENST00000439811 1286 ntBASIC16.91■□□□□ 0.3
CAPN3P20807 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.91■□□□□ 0.3
CAPN3P20807 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.91■□□□□ 0.3
CAPN3P20807 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.91■□□□□ 0.3
CAPN3P20807 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CAPN3P20807 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.91■□□□□ 0.3
CAPN3P20807 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CAPN3P20807 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CAPN3P20807 PCDHB19P-201ENST00000570871 2371 ntBASIC16.91■□□□□ 0.3
CAPN3P20807 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.91■□□□□ 0.3
CAPN3P20807 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
CAPN3P20807 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.9■□□□□ 0.3
CAPN3P20807 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CAPN3P20807 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CAPN3P20807 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CAPN3P20807 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CAPN3P20807 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CAPN3P20807 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CAPN3P20807 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CAPN3P20807 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CAPN3P20807 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CAPN3P20807 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.9■□□□□ 0.3
CAPN3P20807 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CAPN3P20807 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.9■□□□□ 0.3
CAPN3P20807 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CAPN3P20807 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CAPN3P20807 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CAPN3P20807 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CAPN3P20807 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CAPN3P20807 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms