Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 METTL23-205ENST00000588302 925 ntTSL 5 BASIC21.28■■□□□ 1
COL4A1P02462 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.28■■□□□ 1
COL4A1P02462 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL4A1P02462 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.28■■□□□ 1
COL4A1P02462 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A1P02462 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.28■■□□□ 1
COL4A1P02462 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A1P02462 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
COL4A1P02462 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
COL4A1P02462 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL4A1P02462 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
COL4A1P02462 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.28■■□□□ 1
COL4A1P02462 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
COL4A1P02462 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A1P02462 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC21.28■■□□□ 1
COL4A1P02462 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC21.28■■□□□ 1
COL4A1P02462 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL4A1P02462 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A1P02462 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.28■■□□□ 1
COL4A1P02462 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC21.28■■□□□ 1
COL4A1P02462 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
COL4A1P02462 RNF34-208ENST00000555076 593 ntTSL 3 BASIC21.28■■□□□ 1
COL4A1P02462 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL4A1P02462 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
COL4A1P02462 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC21.28■■□□□ 1
COL4A1P02462 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.27■■□□□ 1
COL4A1P02462 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.27■■□□□ 1
COL4A1P02462 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A1P02462 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC21.27■■□□□ 1
COL4A1P02462 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A1P02462 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A1P02462 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A1P02462 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.27■■□□□ 1
COL4A1P02462 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
COL4A1P02462 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
COL4A1P02462 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC21.27■■□□□ 1
COL4A1P02462 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL4A1P02462 PNMT-202ENST00000394246 821 ntTSL 2 BASIC21.27■■□□□ 1
COL4A1P02462 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC21.27■■□□□ 1
COL4A1P02462 AL139327.4-201ENST00000612362 153 ntBASIC21.27■■□□□ 1
COL4A1P02462 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
COL4A1P02462 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A1P02462 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL4A1P02462 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.27■□□□□ 0.99
COL4A1P02462 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL4A1P02462 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
COL4A1P02462 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A1P02462 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 HARS-203ENST00000431330 1774 ntTSL 2 BASIC21.26■□□□□ 0.99
COL4A1P02462 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.26■□□□□ 0.99
COL4A1P02462 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.26■□□□□ 0.99
COL4A1P02462 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A1P02462 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
COL4A1P02462 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC21.26■□□□□ 0.99
COL4A1P02462 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 ABALON-201ENST00000629058 1903 ntBASIC21.26■□□□□ 0.99
COL4A1P02462 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 NABP1-203ENST00000409510 843 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A1P02462 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 AL513480.1-201ENST00000451731 511 ntBASIC21.26■□□□□ 0.99
COL4A1P02462 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC21.26■□□□□ 0.99
COL4A1P02462 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.26■□□□□ 0.99
COL4A1P02462 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC21.26■□□□□ 0.99
COL4A1P02462 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.26■□□□□ 0.99
COL4A1P02462 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A1P02462 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL4A1P02462 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.26■□□□□ 0.99
COL4A1P02462 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.26■□□□□ 0.99
COL4A1P02462 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
COL4A1P02462 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC21.25■□□□□ 0.99
COL4A1P02462 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
COL4A1P02462 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 AC105339.1-204ENST00000636249 355 ntBASIC21.25■□□□□ 0.99
COL4A1P02462 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.25■□□□□ 0.99
COL4A1P02462 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
COL4A1P02462 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL4A1P02462 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
COL4A1P02462 CALY-203ENST00000368558 825 ntTSL 5 BASIC21.24■□□□□ 0.99
COL4A1P02462 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.24■□□□□ 0.99
COL4A1P02462 SPCS2P1-201ENST00000561636 679 ntBASIC21.24■□□□□ 0.99
COL4A1P02462 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC21.24■□□□□ 0.99
COL4A1P02462 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL4A1P02462 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms