Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 AC105917.1-201ENST00000506637 2539 ntBASIC16.63■□□□□ 0.25
CLPTM1O96005 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CLPTM1O96005 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.63■□□□□ 0.25
CLPTM1O96005 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.63■□□□□ 0.25
CLPTM1O96005 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CLPTM1O96005 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CLPTM1O96005 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.62■□□□□ 0.25
CLPTM1O96005 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CLPTM1O96005 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 AL355355.2-201ENST00000442321 338 ntBASIC16.62■□□□□ 0.25
CLPTM1O96005 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.62■□□□□ 0.25
CLPTM1O96005 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.62■□□□□ 0.25
CLPTM1O96005 AC026471.5-201ENST00000615068 467 ntBASIC16.62■□□□□ 0.25
CLPTM1O96005 AL445675.2-201ENST00000620291 557 ntBASIC16.62■□□□□ 0.25
CLPTM1O96005 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.62■□□□□ 0.25
CLPTM1O96005 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.62■□□□□ 0.25
CLPTM1O96005 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CLPTM1O96005 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CLPTM1O96005 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CLPTM1O96005 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.61■□□□□ 0.25
CLPTM1O96005 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.61■□□□□ 0.25
CLPTM1O96005 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CLPTM1O96005 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CLPTM1O96005 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.61■□□□□ 0.25
CLPTM1O96005 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CLPTM1O96005 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CLPTM1O96005 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CLPTM1O96005 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.61■□□□□ 0.25
CLPTM1O96005 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CLPTM1O96005 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.61■□□□□ 0.25
CLPTM1O96005 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.61■□□□□ 0.25
CLPTM1O96005 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.61■□□□□ 0.25
CLPTM1O96005 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CLPTM1O96005 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.61■□□□□ 0.25
CLPTM1O96005 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CLPTM1O96005 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CLPTM1O96005 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.61■□□□□ 0.25
CLPTM1O96005 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CLPTM1O96005 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLPTM1O96005 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.6■□□□□ 0.25
CLPTM1O96005 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.6■□□□□ 0.25
CLPTM1O96005 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.6■□□□□ 0.25
CLPTM1O96005 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
CLPTM1O96005 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.6■□□□□ 0.25
CLPTM1O96005 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CLPTM1O96005 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CLPTM1O96005 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.6■□□□□ 0.25
CLPTM1O96005 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
CLPTM1O96005 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 AC004980.1-204ENST00000429707 299 ntBASIC16.6■□□□□ 0.25
CLPTM1O96005 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.6■□□□□ 0.25
CLPTM1O96005 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.6■□□□□ 0.25
CLPTM1O96005 TSPY15P-201ENST00000457163 923 ntBASIC16.6■□□□□ 0.25
CLPTM1O96005 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLPTM1O96005 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.6■□□□□ 0.25
CLPTM1O96005 AP003071.4-201ENST00000562276 1284 ntBASIC16.6■□□□□ 0.25
CLPTM1O96005 MIR4785-201ENST00000585005 73 ntBASIC16.6■□□□□ 0.25
CLPTM1O96005 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.6■□□□□ 0.25
CLPTM1O96005 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms