Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC093503.3-201ENST00000624917 2352 ntBASIC17.13■□□□□ 0.33
SDC3O75056 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.13■□□□□ 0.33
SDC3O75056 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
SDC3O75056 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.13■□□□□ 0.33
SDC3O75056 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.13■□□□□ 0.33
SDC3O75056 VN2R19P-201ENST00000442399 1052 ntBASIC17.13■□□□□ 0.33
SDC3O75056 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.13■□□□□ 0.33
SDC3O75056 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.13■□□□□ 0.33
SDC3O75056 AC027796.2-201ENST00000575326 344 ntBASIC17.13■□□□□ 0.33
SDC3O75056 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
SDC3O75056 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.13■□□□□ 0.33
SDC3O75056 AL513190.1-201ENST00000621254 727 ntBASIC17.13■□□□□ 0.33
SDC3O75056 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.13■□□□□ 0.33
SDC3O75056 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SDC3O75056 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.13■□□□□ 0.33
SDC3O75056 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 AP000997.3-201ENST00000623333 2250 ntBASIC17.13■□□□□ 0.33
SDC3O75056 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SDC3O75056 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SDC3O75056 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SDC3O75056 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SDC3O75056 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
SDC3O75056 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.12■□□□□ 0.33
SDC3O75056 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.12■□□□□ 0.33
SDC3O75056 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.12■□□□□ 0.33
SDC3O75056 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.12■□□□□ 0.33
SDC3O75056 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.12■□□□□ 0.33
SDC3O75056 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.12■□□□□ 0.33
SDC3O75056 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.12■□□□□ 0.33
SDC3O75056 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.12■□□□□ 0.33
SDC3O75056 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.12■□□□□ 0.33
SDC3O75056 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SDC3O75056 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SDC3O75056 BX276092.7-203ENST00000637198 1536 ntBASIC17.11■□□□□ 0.33
SDC3O75056 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 AC097637.2-201ENST00000624096 1997 ntBASIC17.11■□□□□ 0.33
SDC3O75056 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
SDC3O75056 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.11■□□□□ 0.33
SDC3O75056 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.11■□□□□ 0.33
SDC3O75056 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.11■□□□□ 0.33
SDC3O75056 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SDC3O75056 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SDC3O75056 MCCD1P2-201ENST00000423228 335 ntBASIC17.11■□□□□ 0.33
SDC3O75056 HMGN1P19-201ENST00000436976 333 ntBASIC17.11■□□□□ 0.33
SDC3O75056 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.11■□□□□ 0.33
SDC3O75056 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.11■□□□□ 0.33
SDC3O75056 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.11■□□□□ 0.33
SDC3O75056 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 IGHV3-52-201ENST00000519770 353 ntBASIC17.11■□□□□ 0.33
SDC3O75056 IGHV3-65-201ENST00000523210 341 ntBASIC17.11■□□□□ 0.33
SDC3O75056 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.11■□□□□ 0.33
SDC3O75056 AC005829.1-201ENST00000570002 483 ntBASIC17.11■□□□□ 0.33
SDC3O75056 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
SDC3O75056 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.11■□□□□ 0.33
SDC3O75056 AL355385.1-201ENST00000606123 409 ntBASIC17.11■□□□□ 0.33
SDC3O75056 AC008667.4-201ENST00000607370 168 ntBASIC17.11■□□□□ 0.33
SDC3O75056 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.11■□□□□ 0.33
SDC3O75056 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SDC3O75056 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.11■□□□□ 0.33
SDC3O75056 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms