Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC22.08■■□□□ 1.13
NPHP1O15259 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC22.08■■□□□ 1.13
NPHP1O15259 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
NPHP1O15259 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
NPHP1O15259 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
NPHP1O15259 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
NPHP1O15259 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
NPHP1O15259 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
NPHP1O15259 AL353593.2-201ENST00000602529 1483 ntBASIC22.08■■□□□ 1.12
NPHP1O15259 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
NPHP1O15259 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.12
NPHP1O15259 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
NPHP1O15259 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC22.08■■□□□ 1.12
NPHP1O15259 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC22.08■■□□□ 1.12
NPHP1O15259 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC22.08■■□□□ 1.12
NPHP1O15259 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
NPHP1O15259 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC22.07■■□□□ 1.12
NPHP1O15259 FUT8-AS1-201ENST00000621019 1521 ntBASIC22.07■■□□□ 1.12
NPHP1O15259 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
NPHP1O15259 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
NPHP1O15259 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 AC003669.1-201ENST00000334569 611 ntBASIC22.07■■□□□ 1.12
NPHP1O15259 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC22.07■■□□□ 1.12
NPHP1O15259 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC22.07■■□□□ 1.12
NPHP1O15259 PRSS29P-201ENST00000440800 595 ntBASIC22.07■■□□□ 1.12
NPHP1O15259 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 IGHV3-65-201ENST00000523210 341 ntBASIC22.07■■□□□ 1.12
NPHP1O15259 RFPL4AP1-201ENST00000530883 850 ntBASIC22.07■■□□□ 1.12
NPHP1O15259 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
NPHP1O15259 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC22.07■■□□□ 1.12
NPHP1O15259 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 AC008667.4-201ENST00000607370 168 ntBASIC22.07■■□□□ 1.12
NPHP1O15259 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC22.07■■□□□ 1.12
NPHP1O15259 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC22.07■■□□□ 1.12
NPHP1O15259 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
NPHP1O15259 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
NPHP1O15259 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
NPHP1O15259 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
NPHP1O15259 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
NPHP1O15259 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
NPHP1O15259 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC22.06■■□□□ 1.12
NPHP1O15259 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
NPHP1O15259 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
NPHP1O15259 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC22.06■■□□□ 1.12
NPHP1O15259 HCG4B-203ENST00000450128 991 ntBASIC22.06■■□□□ 1.12
NPHP1O15259 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC22.06■■□□□ 1.12
NPHP1O15259 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC22.06■■□□□ 1.12
NPHP1O15259 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC22.06■■□□□ 1.12
NPHP1O15259 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC22.06■■□□□ 1.12
NPHP1O15259 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
NPHP1O15259 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
NPHP1O15259 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC22.06■■□□□ 1.12
NPHP1O15259 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC22.06■■□□□ 1.12
NPHP1O15259 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC22.05■■□□□ 1.12
NPHP1O15259 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC22.05■■□□□ 1.12
NPHP1O15259 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC22.05■■□□□ 1.12
NPHP1O15259 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC22.05■■□□□ 1.12
NPHP1O15259 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC22.05■■□□□ 1.12
NPHP1O15259 CCND1-203ENST00000536559 553 ntTSL 3 BASIC22.05■■□□□ 1.12
NPHP1O15259 AP002472.1-201ENST00000577490 586 ntBASIC22.05■■□□□ 1.12
NPHP1O15259 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC22.05■■□□□ 1.12
NPHP1O15259 AC106028.4-201ENST00000614509 607 ntBASIC22.05■■□□□ 1.12
NPHP1O15259 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC22.05■■□□□ 1.12
NPHP1O15259 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
NPHP1O15259 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC22.05■■□□□ 1.12
NPHP1O15259 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC22.05■■□□□ 1.12
NPHP1O15259 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
NPHP1O15259 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 AL049757.1-201ENST00000616842 1596 ntBASIC22.04■■□□□ 1.12
NPHP1O15259 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 ELL2P1-201ENST00000413990 1906 ntBASIC22.04■■□□□ 1.12
NPHP1O15259 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NPHP1O15259 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
NPHP1O15259 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC22.04■■□□□ 1.12
NPHP1O15259 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
NPHP1O15259 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
NPHP1O15259 PNMT-202ENST00000394246 821 ntTSL 2 BASIC22.04■■□□□ 1.12
NPHP1O15259 MRPL20P1-201ENST00000400819 433 ntBASIC22.04■■□□□ 1.12
NPHP1O15259 ATP6V0CP3-201ENST00000417255 467 ntBASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms