Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 FAM220CP-201ENST00000395253 831 ntBASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 AC009533.2-201ENST00000543664 586 ntBASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS9D1Q9Y2B5 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 PCED1CP-201ENST00000419887 785 ntBASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 AL139327.4-201ENST00000612362 153 ntBASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 IER3-202ENST00000376377 1350 ntBASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS9D1Q9Y2B5 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 AC141586.5-201ENST00000624546 2050 ntBASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 TSSC2-201ENST00000450217 709 ntBASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 AC111152.3-201ENST00000569699 673 ntBASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 AC016734.2-201ENST00000624325 1377 ntBASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS9D1Q9Y2B5 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 LYSMD4-203ENST00000378904 2122 ntBASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS9D1Q9Y2B5 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms