Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 RNA5SP419-201ENST00000515908 135 ntBASIC17.68■□□□□ 0.42
LHX3Q9UBR4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LHX3Q9UBR4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 RPS2P1-201ENST00000434010 821 ntBASIC17.67■□□□□ 0.42
LHX3Q9UBR4 AF186996.4-201ENST00000467186 377 ntBASIC17.67■□□□□ 0.42
LHX3Q9UBR4 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
LHX3Q9UBR4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 AL773604.1-201ENST00000617417 272 ntBASIC17.66■□□□□ 0.42
LHX3Q9UBR4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 LINC00896-202ENST00000609602 2128 ntBASIC17.66■□□□□ 0.42
LHX3Q9UBR4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LHX3Q9UBR4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 AL662844.1-201ENST00000546340 181 ntBASIC17.65■□□□□ 0.42
LHX3Q9UBR4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 AL049840.3-201ENST00000602669 611 ntBASIC17.65■□□□□ 0.42
LHX3Q9UBR4 MIR7706-201ENST00000613747 67 ntBASIC17.65■□□□□ 0.42
LHX3Q9UBR4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms