Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.14■□□□□ 0.17
LRFN1Q9P244 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LRFN1Q9P244 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LRFN1Q9P244 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.14■□□□□ 0.17
LRFN1Q9P244 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
LRFN1Q9P244 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LRFN1Q9P244 FLJ13224-201ENST00000313737 1514 ntBASIC16.14■□□□□ 0.17
LRFN1Q9P244 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LRFN1Q9P244 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LRFN1Q9P244 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 AC098831.1-202ENST00000438821 336 ntBASIC16.13■□□□□ 0.17
LRFN1Q9P244 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 PRYP5-201ENST00000451909 266 ntBASIC16.13■□□□□ 0.17
LRFN1Q9P244 KRT18P58-201ENST00000527480 1120 ntBASIC16.13■□□□□ 0.17
LRFN1Q9P244 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 AC109462.3-201ENST00000573934 613 ntBASIC16.13■□□□□ 0.17
LRFN1Q9P244 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
LRFN1Q9P244 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LRFN1Q9P244 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.13■□□□□ 0.17
LRFN1Q9P244 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 KLF4P1-201ENST00000412782 1185 ntBASIC16.12■□□□□ 0.17
LRFN1Q9P244 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 IGHV3-52-201ENST00000519770 353 ntBASIC16.12■□□□□ 0.17
LRFN1Q9P244 IGHV3-22-201ENST00000520721 359 ntBASIC16.12■□□□□ 0.17
LRFN1Q9P244 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.12■□□□□ 0.17
LRFN1Q9P244 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
LRFN1Q9P244 AC132938.5-201ENST00000624980 1813 ntBASIC16.12■□□□□ 0.17
LRFN1Q9P244 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRFN1Q9P244 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
LRFN1Q9P244 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRFN1Q9P244 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.11■□□□□ 0.17
LRFN1Q9P244 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRFN1Q9P244 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRFN1Q9P244 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRFN1Q9P244 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRFN1Q9P244 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LRFN1Q9P244 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
LRFN1Q9P244 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.11■□□□□ 0.17
LRFN1Q9P244 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRFN1Q9P244 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms