Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 AC092910.1-201ENST00000482027 1129 ntBASIC18.88■□□□□ 0.61
CNTN3Q9P232 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 AC004706.3-202ENST00000621574 984 ntBASIC18.88■□□□□ 0.61
CNTN3Q9P232 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CNTN3Q9P232 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CNTN3Q9P232 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CNTN3Q9P232 AP002414.3-201ENST00000589352 1468 ntBASIC18.88■□□□□ 0.61
CNTN3Q9P232 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CNTN3Q9P232 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CNTN3Q9P232 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CNTN3Q9P232 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 AC073621.1-201ENST00000392730 636 ntBASIC18.87■□□□□ 0.61
CNTN3Q9P232 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 NCF1C-201ENST00000438382 1427 ntBASIC18.87■□□□□ 0.61
CNTN3Q9P232 AC098831.1-202ENST00000438821 336 ntBASIC18.87■□□□□ 0.61
CNTN3Q9P232 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 AC067852.2-201ENST00000590513 2313 ntBASIC18.87■□□□□ 0.61
CNTN3Q9P232 AC008764.6-201ENST00000595909 2069 ntBASIC18.87■□□□□ 0.61
CNTN3Q9P232 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.87■□□□□ 0.61
CNTN3Q9P232 AF228730.7-201ENST00000641842 219 ntBASIC18.87■□□□□ 0.61
CNTN3Q9P232 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CNTN3Q9P232 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 AC145285.3-201ENST00000564603 959 ntBASIC18.86■□□□□ 0.61
CNTN3Q9P232 AC106730.1-201ENST00000566722 1090 ntBASIC18.86■□□□□ 0.61
CNTN3Q9P232 AL671883.3-201ENST00000603274 991 ntBASIC18.86■□□□□ 0.61
CNTN3Q9P232 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.86■□□□□ 0.61
CNTN3Q9P232 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CNTN3Q9P232 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CNTN3Q9P232 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CNTN3Q9P232 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CNTN3Q9P232 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CNTN3Q9P232 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CNTN3Q9P232 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CNTN3Q9P232 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.85■□□□□ 0.61
CNTN3Q9P232 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms